From Publication:  Qiu J, Noble WS (2008) Predicting CoComplexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 
Notes:  Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.950891495671] 
Complex Size:  2 proteins 
Protein 
GO Cellular Component  GO Biological Process  GO Molecular Function 
PDB1 



PDX1 



Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
mitochondrial pyruvate dehydrogenase complex  7.579E7  2  6  2  6292 
pyruvate dehydrogenase complex  7.579E7  2  6  2  6292 
mitochondrial matrix  7.7811E4  2  176  2  6292 
mitochondrial lumen  7.7811E4  2  176  2  6292 
mitochondrial part  5.6881E3  2  475  2  6292 
nucleoid  8.248E3  2  26  1  6292 
mitochondrial nucleoid  8.248E3  2  26  1  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
pyruvate metabolic process  4.7798E5  2  44  2  6292 
monocarboxylic acid metabolic process  4.5024E4  2  134  2  6292 
acetylCoA biosynthetic process from pyruvate  6.3568E4  2  2  1  6292 
acetylCoA biosynthetic process  1.2712E3  2  4  1  6292 
organic acid metabolic process  2.793E3  2  333  2  6292 
oxoacid metabolic process  2.793E3  2  333  2  6292 
carboxylic acid metabolic process  2.793E3  2  333  2  6292 
cellular ketone metabolic process  3.0157E3  2  346  2  6292 
acetylCoA metabolic process  6.3477E3  2  20  1  6292 
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the pvalue represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a pvalue less than or equal to 0.01.
GO Term 
Pvalue 
A 
B 
I 
T 
pyruvate dehydrogenase (acetyltransferring) activity  1.2712E3  2  4  1  6292 
pyruvate dehydrogenase activity  1.2712E3  2  4  1  6292 
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor  1.5888E3  2  5  1  6292 
oxidoreductase activity, acting on the aldehyde or oxo group of donors  7.9314E3  2  25  1  6292 