| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.07643838271] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription factor TFIID complex | 5.3053E-6 | 2 | 15 | 2 | 6292 |
| DNA-directed RNA polymerase II, holoenzyme | 7.7811E-5 | 2 | 56 | 2 | 6292 |
| transcription factor complex | 1.2556E-4 | 2 | 71 | 2 | 6292 |
| transcription factor TFIIF complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| transcription factor TFIIIB complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| nucleoplasm part | 1.5102E-3 | 2 | 245 | 2 | 6292 |
| nucleoplasm | 1.7541E-3 | 2 | 264 | 2 | 6292 |
| RNA polymerase I transcription factor complex | 2.859E-3 | 2 | 9 | 1 | 6292 |
| Ino80 complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| DNA helicase complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| SWI/SNF-type complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| SWI/SNF complex | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| nuclear lumen | 5.1728E-3 | 2 | 453 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transcription initiation from RNA polymerase II promoter | 5.4619E-5 | 2 | 47 | 2 | 6292 |
| transcription initiation | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| protein complex biogenesis | 6.0304E-4 | 2 | 155 | 2 | 6292 |
| protein complex assembly | 6.0304E-4 | 2 | 155 | 2 | 6292 |
| macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| transcription from RNA polymerase II promoter | 2.8267E-3 | 2 | 335 | 2 | 6292 |
| macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
| transcription initiation from RNA polymerase III promoter | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
| regulation of transcription involved in G1 phase of mitotic cell cycle | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
| RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
| transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
| G1 phase of mitotic cell cycle | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| G1 phase | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| transcription from RNA polymerase I promoter | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| general RNA polymerase II transcription factor activity | 1.0186E-4 | 2 | 64 | 2 | 6292 |
| RNA polymerase II transcription factor activity | 4.2367E-4 | 2 | 130 | 2 | 6292 |
| protein homodimerization activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| identical protein binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| protein dimerization activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| transcription regulator activity | 2.8947E-3 | 2 | 339 | 2 | 6292 |
| RNA polymerase I transcription factor activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| RNA polymerase III transcription factor activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| DNA bending activity | 4.1283E-3 | 2 | 13 | 1 | 6292 |