YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.12955968222]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
SPC1
  • signal peptidase complex
    		•
  • signal peptide processing
  • protein targeting to ER
    		•
  • molecular_function
    		•
    SPC3
  • signal peptidase complex
    		•
  • signal peptide processing
  • protein targeting to ER
    		•
  • signal peptidase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    signal peptidase complex 3.0316E-7 2 4 2 6292
    endoplasmic reticulum membrane 4.4352E-4 2 133 2 6292
    endoplasmic reticulum part 5.6464E-4 2 150 2 6292
    subsynaptic reticulum 5.6464E-4 2 150 2 6292
    nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
    endoplasmic reticulum 3.3381E-3 2 364 2 6292
    endomembrane system 3.9918E-3 2 398 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    signal peptide processing 1.0611E-6 2 7 2 6292
    protein maturation by peptide bond cleavage 1.0611E-6 2 7 2 6292
    peptide metabolic process 1.2783E-5 2 23 2 6292
    protein processing 2.5061E-5 2 32 2 6292
    protein targeting to ER 2.6678E-5 2 33 2 6292
    protein maturation 3.9411E-5 2 40 2 6292
    protein localization in endoplasmic reticulum 3.9411E-5 2 40 2 6292
    protein localization in organelle 5.5711E-4 2 149 2 6292
    protein targeting 1.3892E-3 2 235 2 6292
    intracellular protein transport 1.6363E-3 2 255 2 6292
    protein transport 1.8213E-3 2 269 2 6292
    establishment of protein localization 1.8485E-3 2 271 2 6292
    cellular protein localization 1.8898E-3 2 274 2 6292
    cellular macromolecule localization 2.0305E-3 2 284 2 6292
    protein localization 2.3118E-3 2 303 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292
    intracellular transport 7.7118E-3 2 553 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    signal peptidase activity 6.3568E-4 2 2 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle