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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.21286706356]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
ATP19
  • mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
  • mitochondrion
    		•
  • ATP synthesis coupled proton transport
    		•
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•
    ATP6
  • mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
  • mitochondrion
    		•
  • ATP synthesis coupled proton transport
    		•
  • hydrogen ion transporting ATP synthase activity, rotational mechanism
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 3.3348E-6 2 12 2 6292
    proton-transporting ATP synthase complex, coupling factor F(o) 3.3348E-6 2 12 2 6292
    proton-transporting two-sector ATPase complex, proton-transporting domain 8.6401E-6 2 19 2 6292
    mitochondrial proton-transporting ATP synthase complex 9.6001E-6 2 20 2 6292
    proton-transporting ATP synthase complex 9.6001E-6 2 20 2 6292
    proton-transporting two-sector ATPase complex 3.0063E-5 2 35 2 6292
    mitochondrial membrane part 2.5011E-4 2 100 2 6292
    mitochondrial inner membrane 7.6048E-4 2 174 2 6292
    organelle inner membrane 8.5997E-4 2 185 2 6292
    mitochondrial membrane 1.7808E-3 2 266 2 6292
    mitochondrial envelope 2.4514E-3 2 312 2 6292
    mitochondrial part 5.6881E-3 2 475 2 6292
    envelope 6.43E-3 2 505 2 6292
    organelle envelope 6.43E-3 2 505 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    ATP synthesis coupled proton transport 9.6001E-6 2 20 2 6292
    energy coupled proton transport, down electrochemical gradient 9.6001E-6 2 20 2 6292
    ATP metabolic process 9.6001E-6 2 20 2 6292
    ATP biosynthetic process 9.6001E-6 2 20 2 6292
    purine ribonucleoside triphosphate biosynthetic process 1.1672E-5 2 22 2 6292
    purine nucleoside triphosphate biosynthetic process 1.1672E-5 2 22 2 6292
    proton transport 1.3945E-5 2 24 2 6292
    ribonucleoside triphosphate biosynthetic process 1.3945E-5 2 24 2 6292
    hydrogen transport 1.3945E-5 2 24 2 6292
    purine ribonucleoside triphosphate metabolic process 1.7735E-5 2 27 2 6292
    purine nucleoside triphosphate metabolic process 1.7735E-5 2 27 2 6292
    nucleoside triphosphate biosynthetic process 1.7735E-5 2 27 2 6292
    ribonucleoside triphosphate metabolic process 2.0514E-5 2 29 2 6292
    monovalent inorganic cation transport 2.3495E-5 2 31 2 6292
    ion transmembrane transport 2.5061E-5 2 32 2 6292
    nucleoside triphosphate metabolic process 2.8346E-5 2 34 2 6292
    purine ribonucleotide biosynthetic process 4.3504E-5 2 42 2 6292
    ribonucleotide biosynthetic process 5.0022E-5 2 45 2 6292
    oxidative phosphorylation 5.2295E-5 2 46 2 6292
    purine nucleotide biosynthetic process 5.9419E-5 2 49 2 6292
    purine ribonucleotide metabolic process 6.6999E-5 2 52 2 6292
    ribonucleotide metabolic process 7.5032E-5 2 55 2 6292
    purine nucleotide metabolic process 8.3521E-5 2 58 2 6292
    nucleotide biosynthetic process 1.2202E-4 2 70 2 6292
    transmembrane transport 1.7194E-4 2 83 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid biosynthetic process 2.0236E-4 2 90 2 6292
    nucleobase, nucleoside and nucleotide biosynthetic process 2.0236E-4 2 90 2 6292
    cation transport 2.256E-4 2 95 2 6292
    ion transport 3.6076E-4 2 120 2 6292
    nucleotide metabolic process 4.1068E-4 2 128 2 6292
    nucleoside phosphate metabolic process 4.1068E-4 2 128 2 6292
    nucleobase, nucleoside and nucleotide metabolic process 6.1875E-4 2 157 2 6292
    heterocycle metabolic process 7.3441E-4 2 171 2 6292
    phosphorylation 8.0494E-4 2 179 2 6292
    generation of precursor metabolites and energy 9.5571E-4 2 195 2 6292
    phosphorus metabolic process 1.3191E-3 2 229 2 6292
    phosphate metabolic process 1.3191E-3 2 229 2 6292
    cellular nitrogen compound biosynthetic process 1.5351E-3 2 247 2 6292
    small molecule biosynthetic process 2.42E-3 2 310 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    hydrogen ion transporting ATP synthase activity, rotational mechanism 5.3053E-6 2 15 2 6292
    hydrogen ion transmembrane transporter activity 7.2304E-5 2 54 2 6292
    monovalent inorganic cation transmembrane transporter activity 8.6451E-5 2 59 2 6292
    inorganic cation transmembrane transporter activity 2.5516E-4 2 101 2 6292
    cation transmembrane transporter activity 3.4879E-4 2 118 2 6292
    ion transmembrane transporter activity 5.3483E-4 2 146 2 6292
    substrate-specific transmembrane transporter activity 1.7943E-3 2 267 2 6292
    transmembrane transporter activity 2.3578E-3 2 306 2 6292
    substrate-specific transporter activity 2.8436E-3 2 336 2 6292
    transporter activity 4.1132E-3 2 404 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle