From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.82224733029] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
respiratory chain complex II | 3.0316E-7 | 2 | 4 | 2 | 6292 |
mitochondrial respiratory chain complex II | 3.0316E-7 | 2 | 4 | 2 | 6292 |
succinate dehydrogenase complex (ubiquinone) | 3.0316E-7 | 2 | 4 | 2 | 6292 |
fumarate reductase complex | 3.0316E-7 | 2 | 4 | 2 | 6292 |
succinate dehydrogenase complex | 3.0316E-7 | 2 | 4 | 2 | 6292 |
mitochondrial respiratory chain | 1.6421E-5 | 2 | 26 | 2 | 6292 |
respiratory chain | 1.6421E-5 | 2 | 26 | 2 | 6292 |
mitochondrial membrane part | 2.5011E-4 | 2 | 100 | 2 | 6292 |
mitochondrial inner membrane | 7.6048E-4 | 2 | 174 | 2 | 6292 |
organelle inner membrane | 8.5997E-4 | 2 | 185 | 2 | 6292 |
mitochondrial membrane | 1.7808E-3 | 2 | 266 | 2 | 6292 |
mitochondrial envelope | 2.4514E-3 | 2 | 312 | 2 | 6292 |
mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor | 5.0527E-7 | 2 | 5 | 2 | 6292 |
succinate dehydrogenase (ubiquinone) activity | 5.0527E-7 | 2 | 5 | 2 | 6292 |
succinate dehydrogenase activity | 5.0527E-7 | 2 | 5 | 2 | 6292 |
oxidoreductase activity, acting on the CH-CH group of donors | 1.3945E-5 | 2 | 24 | 2 | 6292 |
oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |