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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.091] [SVM Score: 0.286190670318]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

alpha,alpha-trehalose-phosphate synthase complex (UDP-forming) 1.2712E-3 2 4 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cellular carbohydrate metabolic process 1.7276E-3 2 262 2 6292
trehalose biosynthetic process 1.9064E-3 2 6 1 6292
glycoside biosynthetic process 1.9064E-3 2 6 1 6292
disaccharide biosynthetic process 1.9064E-3 2 6 1 6292
carbohydrate metabolic process 1.9877E-3 2 281 2 6292
trehalose metabolic process 2.859E-3 2 9 1 6292
glycoside metabolic process 3.1764E-3 2 10 1 6292
pentose-phosphate shunt 3.811E-3 2 12 1 6292
disaccharide metabolic process 4.1283E-3 2 13 1 6292
NADPH regeneration 4.7627E-3 2 15 1 6292
oligosaccharide biosynthetic process 5.0798E-3 2 16 1 6292
NADP metabolic process 5.7138E-3 2 18 1 6292
oligosaccharide metabolic process 8.8811E-3 2 28 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transketolase activity 6.3568E-4 2 2 1 6292
alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity 9.5344E-4 2 3 1 6292
transferase activity, transferring aldehyde or ketonic groups 2.224E-3 2 7 1 6292
UDP-glucosyltransferase activity 4.4455E-3 2 14 1 6292
glucosyltransferase activity 5.0798E-3 2 16 1 6292
UDP-glycosyltransferase activity 8.5646E-3 2 27 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle