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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.057] [SVM Score: 0.331998938306]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear outer membrane 1.8468E-4 2 86 2 6292
nuclear membrane 2.3525E-4 2 97 2 6292
box H/ACA snoRNP complex 6.3568E-4 2 2 1 6292
outer membrane 7.9595E-4 2 178 2 6292
organelle outer membrane 7.9595E-4 2 178 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
nucleolus 1.1194E-3 2 211 2 6292
nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
endomembrane system 3.9918E-3 2 398 2 6292
nuclear lumen 5.1728E-3 2 453 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA-3'-phosphate cyclase activity 3.1786E-4 2 1 1 6292
cyclase activity 6.3568E-4 2 2 1 6292
ligase activity, forming phosphoric ester bonds 1.2712E-3 2 4 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle