YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.708316111408]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

pyridoxine biosynthetic process 3.1786E-4 2 1 1 6292
vitamin B6 biosynthetic process 3.1786E-4 2 1 1 6292
maturation of 5.8S rRNA 1.2712E-3 2 4 1 6292
cleavage involved in rRNA processing 1.2712E-3 2 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.2712E-3 2 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.2712E-3 2 4 1 6292
endonucleolytic cleavage involved in rRNA processing 1.2712E-3 2 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.2712E-3 2 4 1 6292
vitamin B6 metabolic process 2.5415E-3 2 8 1 6292
pyridoxine metabolic process 2.5415E-3 2 8 1 6292
ribosome biogenesis 3.0157E-3 2 346 2 6292
ribonucleoprotein complex biogenesis 3.5243E-3 2 374 2 6292
pentose-phosphate shunt 3.811E-3 2 12 1 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 4.1283E-3 2 13 1 6292
NADPH regeneration 4.7627E-3 2 15 1 6292
NADP metabolic process 5.7138E-3 2 18 1 6292
rRNA export from nucleus 8.5646E-3 2 27 1 6292
rRNA transport 8.5646E-3 2 27 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribose-5-phosphate isomerase activity 3.1786E-4 2 1 1 6292
intramolecular oxidoreductase activity, interconverting aldoses and ketoses 3.1764E-3 2 10 1 6292
rRNA binding 5.0798E-3 2 16 1 6292
intramolecular oxidoreductase activity 6.0308E-3 2 19 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle