YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.
Notes: From the published set of core protein complex predictions.
Complex Size: 4 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
ADE3
  • nucleus
  • cytoplasm
    		•
  • folic acid and derivative metabolic process
  • purine base biosynthetic process
    		•
  • formate-tetrahydrofolate ligase activity
  • methenyltetrahydrofolate cyclohydrolase activity
  • methylenetetrahydrofolate dehydrogenase (NADP+) activity
    		•
    MIS1
  • mitochondrion
    		•
  • ribosome biogenesis
  • folic acid biosynthetic process
  • anaerobic purine catabolic process
  • nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
  • acetate biosynthetic process from carbon monoxide
    		•
  • formate-tetrahydrofolate ligase activity
  • methenyltetrahydrofolate cyclohydrolase activity
  • methylenetetrahydrofolate dehydrogenase (NADP+) activity
    		•
    RPP1B
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
    		•
  • translational elongation
  • translation
    		•
  • structural constituent of ribosome
    		•
    TMA108
  • cytoplasm
  • ribosome
    		•
  • biological_process
    		•
  • molecular_function
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    folic acid and derivative metabolic process 1.0898E-5 4 9 2 6292
    purine base metabolic process 3.1744E-5 4 15 2 6292
    group transfer coenzyme metabolic process 9.0505E-5 4 25 2 6292
    nucleobase metabolic process 1.5902E-4 4 33 2 6292
    folic acid biosynthetic process 6.3573E-4 4 1 1 6292
    pteridine and derivative biosynthetic process 6.3573E-4 4 1 1 6292
    nitrogenous compound catabolic process 6.3573E-4 4 1 1 6292
    anaerobic purine catabolic process 6.3573E-4 4 1 1 6292
    acetate biosynthetic process from carbon monoxide 6.3573E-4 4 1 1 6292
    cellular aromatic compound metabolic process 9.6587E-4 4 81 2 6292
    folic acid metabolic process 1.2712E-3 4 2 1 6292
    nucleobase catabolic process 1.2712E-3 4 2 1 6292
    pteridine and derivative metabolic process 1.2712E-3 4 2 1 6292
    purine base catabolic process 1.2712E-3 4 2 1 6292
    coenzyme metabolic process 2.1108E-3 4 120 2 6292
    acetate biosynthetic process 2.5411E-3 4 4 1 6292
    monocarboxylic acid metabolic process 2.6265E-3 4 134 2 6292
    cofactor metabolic process 3.4575E-3 4 154 2 6292
    nucleobase, nucleoside and nucleotide metabolic process 3.5916E-3 4 157 2 6292
    folic acid and derivative biosynthetic process 3.8098E-3 4 6 1 6292
    heterocycle metabolic process 4.2502E-3 4 171 2 6292
    acetate metabolic process 4.4437E-3 4 7 1 6292
    purine base biosynthetic process 4.4437E-3 4 7 1 6292
    cellular nitrogen compound biosynthetic process 8.739E-3 4 247 2 6292
    nucleobase, nucleoside, nucleotide and nucleic acid catabolic process 9.5041E-3 4 15 1 6292
    nucleobase, nucleoside and nucleotide catabolic process 9.5041E-3 4 15 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    methenyltetrahydrofolate cyclohydrolase activity 3.0316E-7 4 2 2 6292
    methylenetetrahydrofolate dehydrogenase (NADP+) activity 3.0316E-7 4 2 2 6292
    formate-tetrahydrofolate ligase activity 3.0316E-7 4 2 2 6292
    methylenetetrahydrofolate dehydrogenase activity 9.0929E-7 4 3 2 6292
    cyclohydrolase activity 1.3619E-5 4 10 2 6292
    oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor 1.9966E-5 4 12 2 6292
    oxidoreductase activity, acting on the CH-NH group of donors 2.7517E-5 4 14 2 6292
    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines 7.6359E-5 4 23 2 6292
    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds 9.4222E-4 4 80 2 6292
    ligase activity, forming carbon-nitrogen bonds 1.2994E-3 4 94 2 6292
    ligase activity 3.2825E-3 4 150 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle