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View Protein Complex Details

Complex Overview

From Publication: Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22.
Notes: From the published set of core protein complex predictions.
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ubiquitin ligase complex 9.3752E-4 7 43 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

protein modification by small protein conjugation or removal 3.4316E-6 7 114 4 6292
protein deubiquitination 2.2059E-4 7 21 2 6292
protein polyubiquitination 2.2059E-4 7 21 2 6292
protein monoubiquitination 2.6548E-4 7 23 2 6292
post-translational protein modification 3.1112E-4 7 357 4 6292
protein modification by small protein removal 4.2467E-4 7 29 2 6292
farnesyl diphosphate biosynthetic process, mevalonate pathway 1.1125E-3 7 1 1 6292
protein modification process 1.1271E-3 7 499 4 6292
macromolecule modification 1.8549E-3 7 569 4 6292
protein ubiquitination 2.1344E-3 7 65 2 6292
terpenoid metabolic process 2.224E-3 7 2 1 6292
terpenoid biosynthetic process 2.224E-3 7 2 1 6292
farnesyl diphosphate biosynthetic process 2.224E-3 7 2 1 6292
farnesyl diphosphate metabolic process 2.224E-3 7 2 1 6292
prenol metabolic process 3.3344E-3 7 3 1 6292
prenol biosynthetic process 3.3344E-3 7 3 1 6292
polyprenol metabolic process 3.3344E-3 7 3 1 6292
polyprenol biosynthetic process 3.3344E-3 7 3 1 6292
protein modification by small protein conjugation 3.7089E-3 7 86 2 6292
secondary metabolic process 5.552E-3 7 5 1 6292
isoprenoid metabolic process 6.6592E-3 7 6 1 6292
isoprenoid biosynthetic process 6.6592E-3 7 6 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

phosphoribosylformylglycinamidine synthase activity 1.1125E-3 7 1 1 6292
ligase activity, forming carbon-nitrogen bonds 4.4166E-3 7 94 2 6292
ubiquitin binding 7.7654E-3 7 7 1 6292
small conjugating protein binding 8.8705E-3 7 8 1 6292
carbon-nitrogen ligase activity, with glutamine as amido-N-donor 9.9746E-3 7 9 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle