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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 3 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

clathrin-coated vesicle 7.0268E-5 3 31 2 6292
coated vesicle 5.114E-4 3 83 2 6292
cytoplasmic vesicle 8.5005E-4 3 107 2 6292
membrane-bounded vesicle 8.5005E-4 3 107 2 6292
cytoplasmic membrane-bounded vesicle 8.5005E-4 3 107 2 6292
vesicle 8.9832E-4 3 110 2 6292
trans-Golgi network transport vesicle 5.2364E-3 3 11 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cell wall chitin metabolic process 2.8918E-9 3 10 3 6292
cell wall polysaccharide metabolic process 5.3017E-9 3 12 3 6292
aminoglycan metabolic process 6.8922E-9 3 13 3 6292
chitin metabolic process 6.8922E-9 3 13 3 6292
cell wall macromolecule metabolic process 4.8776E-8 3 24 3 6292
Golgi to plasma membrane transport 1.0832E-7 3 31 3 6292
polysaccharide metabolic process 8.2465E-7 3 60 3 6292
post-Golgi vesicle-mediated transport 1.2077E-6 3 68 3 6292
cell wall biogenesis 1.9799E-6 3 80 3 6292
cell wall chitin biosynthetic process 5.4528E-6 3 9 2 6292
cell wall polysaccharide biosynthetic process 5.4528E-6 3 9 2 6292
aminoglycan biosynthetic process 8.329E-6 3 11 2 6292
chitin biosynthetic process 8.329E-6 3 11 2 6292
Golgi vesicle transport 1.8706E-5 3 168 3 6292
cell wall macromolecule biosynthetic process 3.4941E-5 3 22 2 6292
cellular component macromolecule biosynthetic process 3.4941E-5 3 22 2 6292
cell wall organization or biogenesis 3.5624E-5 3 208 3 6292
cellular cell wall organization or biogenesis 3.5624E-5 3 208 3 6292
cellular cell wall macromolecule metabolic process 3.8264E-5 3 23 2 6292
amine metabolic process 5.6922E-5 3 243 3 6292
cellular polysaccharide biosynthetic process 7.4945E-5 3 32 2 6292
carbohydrate metabolic process 8.8168E-5 3 281 3 6292
polysaccharide biosynthetic process 8.9875E-5 3 35 2 6292
vesicle-mediated transport 1.5647E-4 3 340 3 6292
cellular polysaccharide metabolic process 2.2383E-4 3 55 2 6292
cellular carbohydrate biosynthetic process 4.5153E-4 3 78 2 6292
cell wall macromolecule catabolic process 4.768E-4 3 1 1 6292
cell wall chitin catabolic process 4.768E-4 3 1 1 6292
carbohydrate biosynthetic process 6.1487E-4 3 91 2 6292
intracellular transport 6.7555E-4 3 553 3 6292
establishment of localization in cell 8.589E-4 3 599 3 6292
aminoglycan catabolic process 9.5344E-4 3 2 1 6292
chitin catabolic process 9.5344E-4 3 2 1 6292
cellular localization 1.0628E-3 3 643 3 6292
cellular component biogenesis 1.3367E-3 3 694 3 6292
transport 3.9684E-3 3 997 3 6292
establishment of localization 4.1014E-3 3 1008 3 6292
localization 4.7701E-3 3 1060 3 6292
cellular carbohydrate metabolic process 5.0399E-3 3 262 2 6292
polysaccharide catabolic process 5.2364E-3 3 11 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


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Created and Maintained by: Michael Riffle