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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

small nucleolar ribonucleoprotein complex 1.7053E-10 5 72 5 6292
nuclear outer membrane 1.6105E-7 5 86 4 6292
nuclear membrane 2.6239E-7 5 97 4 6292
box C/D snoRNP complex 5.0527E-7 5 2 2 6292
outer membrane 3.0301E-6 5 178 4 6292
organelle outer membrane 3.0301E-6 5 178 4 6292
ribonucleoprotein complex 3.5735E-6 5 514 5 6292
nuclear envelope 4.7376E-6 5 199 4 6292
nuclear membrane-endoplasmic reticulum network 8.752E-6 5 232 4 6292
endomembrane system 7.4965E-5 5 398 4 6292
envelope 1.9214E-4 5 505 4 6292
organelle envelope 1.9214E-4 5 505 4 6292
nucleolus 3.5374E-4 5 211 3 6292
nucleolar part 4.9341E-4 5 45 2 6292
membrane part 5.5686E-4 5 662 4 6292
organelle membrane 6.6237E-4 5 692 4 6292
macromolecular complex 1.1794E-3 5 1635 5 6292
nuclear lumen 3.3223E-3 5 453 3 6292
nuclear part 4.0435E-3 5 1103 4 6292
small-subunit processome 4.7604E-3 5 6 1 6292
membrane 5.5504E-3 5 1198 4 6292
organelle lumen 9.7686E-3 5 660 3 6292
intracellular organelle lumen 9.7686E-3 5 660 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA 6.1017E-11 5 59 5 6292
rRNA processing 3.2245E-9 5 128 5 6292
rRNA metabolic process 4.553E-9 5 137 5 6292
ncRNA processing 4.4524E-8 5 215 5 6292
ncRNA metabolic process 1.095E-7 5 257 5 6292
rRNA modification 1.9594E-7 5 18 3 6292
ribosome biogenesis 4.8924E-7 5 346 5 6292
ribonucleoprotein complex biogenesis 7.2351E-7 5 374 5 6292
RNA processing 7.8377E-7 5 380 5 6292
RNA modification 1.2982E-5 5 70 3 6292
cellular component biogenesis 1.6117E-5 5 694 5 6292
RNA metabolic process 7.942E-5 5 954 5 6292
gene expression 3.5034E-4 5 1283 5 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule modification 6.4022E-3 5 569 3 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

snoRNA binding 2.3279E-4 5 31 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle