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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 9.029E-9 7 211 6 6292
nuclear lumen 8.8765E-7 7 453 6 6292
non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
intracellular non-membrane-bounded organelle 1.8755E-6 7 959 7 6292
organelle lumen 8.3215E-6 7 660 6 6292
intracellular organelle lumen 8.3215E-6 7 660 6 6292
membrane-enclosed lumen 1.1789E-5 7 700 6 6292
nuclear outer membrane 8.2954E-5 7 86 3 6292
nuclear membrane 1.1888E-4 7 97 3 6292
nuclear part 1.7083E-4 7 1103 6 6292
outer membrane 7.1655E-4 7 178 3 6292
organelle outer membrane 7.1655E-4 7 178 3 6292
intracellular organelle part 8.2061E-4 7 2282 7 6292
organelle part 8.2061E-4 7 2282 7 6292
nuclear envelope 9.9288E-4 7 199 3 6292
nuclear membrane-endoplasmic reticulum network 1.5515E-3 7 232 3 6292
box C/D snoRNP complex 2.224E-3 7 2 1 6292
nucleus 5.8629E-3 7 2041 6 6292
endomembrane system 7.2588E-3 7 398 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 6.5525E-8 7 128 5 6292
rRNA metabolic process 9.2297E-8 7 137 5 6292
ribosome biogenesis 1.7714E-7 7 346 6 6292
ribonucleoprotein complex biogenesis 2.8234E-7 7 374 6 6292
ncRNA processing 8.837E-7 7 215 5 6292
ncRNA metabolic process 2.1485E-6 7 257 5 6292
cellular component biogenesis 1.1204E-5 7 694 6 6292
RNA processing 1.4865E-5 7 380 5 6292
RNA metabolic process 1.2754E-3 7 954 5 6292
maturation of SSU-rRNA 1.7614E-3 7 59 2 6292
ribosome assembly 2.0698E-3 7 64 2 6292
organelle assembly 2.4022E-3 7 69 2 6292
ribonucleoprotein complex assembly 4.2342E-3 7 92 2 6292
gene expression 5.0816E-3 7 1283 5 6292
nucleic acid metabolic process 7.9545E-3 7 1415 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle