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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 2.3635E-7 6 211 5 6292
nuclear lumen 1.0695E-5 6 453 5 6292
non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
intracellular non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
organelle lumen 6.864E-5 6 660 5 6292
intracellular organelle lumen 6.864E-5 6 660 5 6292
membrane-enclosed lumen 9.1664E-5 6 700 5 6292
nuclear part 8.4241E-4 6 1103 5 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292
nuclear outer membrane 2.6729E-3 6 86 2 6292
nuclear membrane 3.389E-3 6 97 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.8028E-6 6 346 5 6292
ribonucleoprotein complex biogenesis 4.1287E-6 6 374 5 6292
cellular component biogenesis 8.7868E-5 6 694 5 6292
rRNA processing 1.5729E-4 6 128 3 6292
rRNA metabolic process 1.9253E-4 6 137 3 6292
ncRNA processing 7.2911E-4 6 215 3 6292
ncRNA metabolic process 1.2291E-3 6 257 3 6292
RNA processing 3.811E-3 6 380 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle