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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription factor TFIIIC complex 1.1632E-20 6 6 6 6292
transcription factor complex 1.6659E-12 6 71 6 6292
nucleoplasm part 3.2848E-9 6 245 6 6292
nucleoplasm 5.1651E-9 6 264 6 6292
nuclear lumen 1.3504E-7 6 453 6 6292
organelle lumen 1.3052E-6 6 660 6 6292
intracellular organelle lumen 1.3052E-6 6 660 6 6292
membrane-enclosed lumen 1.8602E-6 6 700 6 6292
nuclear part 2.8697E-5 6 1103 6 6292
protein complex 3.4445E-5 6 1137 6 6292
macromolecular complex 3.0579E-4 6 1635 6 6292
nucleus 1.1592E-3 6 2041 6 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription initiation from RNA polymerase III promoter 5.3738E-18 6 11 6 6292
transcription from RNA polymerase III promoter 3.2111E-14 6 38 6 6292
transcription initiation 4.7079E-13 6 58 6 6292
protein complex assembly 2.0312E-10 6 155 6 6292
protein complex biogenesis 2.0312E-10 6 155 6 6292
macromolecular complex assembly 7.5371E-9 6 281 6 6292
macromolecular complex subunit organization 3.2061E-8 6 357 6 6292
cellular component assembly 5.059E-8 6 385 6 6292
transcription, DNA-dependent 2.5393E-7 6 503 6 6292
RNA biosynthetic process 2.6954E-7 6 508 6 6292
transcription 4.4473E-7 6 552 6 6292
cellular component biogenesis 1.7662E-6 6 694 6 6292
RNA metabolic process 1.1988E-5 6 954 6 6292
cellular macromolecule biosynthetic process 4.4618E-5 6 1187 6 6292
macromolecule biosynthetic process 4.5072E-5 6 1189 6 6292
gene expression 7.1216E-5 6 1283 6 6292
nucleic acid metabolic process 1.283E-4 6 1415 6 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 2.3599E-4 6 1566 6 6292
cellular biosynthetic process 2.3689E-4 6 1567 6 6292
cellular component organization 2.5085E-4 6 1582 6 6292
biosynthetic process 2.7052E-4 6 1602 6 6292
cellular nitrogen compound metabolic process 4.9256E-4 6 1770 6 6292
nitrogen compound metabolic process 5.2873E-4 6 1791 6 6292
cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
macromolecule metabolic process 2.6967E-3 6 2349 6 6292
primary metabolic process 9.4808E-3 6 2896 6 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA polymerase III transcription factor activity 2.4426E-18 6 10 6 6292
transcription regulator activity 2.3452E-8 6 339 6 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle