| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.433855997175] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| RIF1 |
|
|
|
| SMC2 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| nuclear condensin complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| condensin complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| telomere cap complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| nuclear telomere cap complex | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| nuclear chromosome, telomeric region | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| chromosome, telomeric region | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| mitotic chromosome condensation | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| chromosome condensation | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| telomere maintenance via telomere lengthening | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| telomere maintenance via telomerase | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| RNA-dependent DNA replication | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| chromosome organization | 7.7677E-3 | 2 | 555 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| sequence-specific DNA binding | 6.1895E-5 | 2 | 50 | 2 | 6292 |
| AT DNA binding | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| DNA binding | 1.6492E-3 | 2 | 256 | 2 | 6292 |
| DNA secondary structure binding | 2.859E-3 | 2 | 9 | 1 | 6292 |
| telomeric DNA binding | 3.811E-3 | 2 | 12 | 1 | 6292 |
| double-stranded DNA binding | 7.2981E-3 | 2 | 23 | 1 | 6292 |