| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.085] [SVM Score: 0.487911803909] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| rough endoplasmic reticulum | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| rough endoplasmic reticulum membrane | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| endoplasmic reticulum membrane | 4.4352E-4 | 2 | 133 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| receptor complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| signal recognition particle receptor complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| Sec62/Sec63 complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| endoplasmic reticulum Sec complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| integral to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
| intrinsic to endoplasmic reticulum membrane | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein targeting to ER | 2.6678E-5 | 2 | 33 | 2 | 6292 |
| protein localization in endoplasmic reticulum | 3.9411E-5 | 2 | 40 | 2 | 6292 |
| protein targeting to membrane | 6.6999E-5 | 2 | 52 | 2 | 6292 |
| protein localization in organelle | 5.5711E-4 | 2 | 149 | 2 | 6292 |
| protein targeting | 1.3892E-3 | 2 | 235 | 2 | 6292 |
| intracellular protein transport | 1.6363E-3 | 2 | 255 | 2 | 6292 |
| protein transport | 1.8213E-3 | 2 | 269 | 2 | 6292 |
| establishment of protein localization | 1.8485E-3 | 2 | 271 | 2 | 6292 |
| cellular protein localization | 1.8898E-3 | 2 | 274 | 2 | 6292 |
| cellular macromolecule localization | 2.0305E-3 | 2 | 284 | 2 | 6292 |
| protein localization | 2.3118E-3 | 2 | 303 | 2 | 6292 |
| posttranslational protein targeting to membrane | 2.859E-3 | 2 | 9 | 1 | 6292 |
| macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
| SRP-dependent cotranslational protein targeting to membrane | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| cotranslational protein targeting to membrane | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
| establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| signal recognition particle binding | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| ribonucleoprotein binding | 2.224E-3 | 2 | 7 | 1 | 6292 |
| guanyl ribonucleotide binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| GTP binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| guanyl nucleotide binding | 5.7138E-3 | 2 | 18 | 1 | 6292 |