| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.084] [SVM Score: 0.490222402146] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endoplasmic reticulum membrane | 4.4352E-4 | 2 | 133 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| translocon complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| Sec61 translocon complex | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
| rough endoplasmic reticulum | 3.811E-3 | 2 | 12 | 1 | 6292 |
| rough endoplasmic reticulum membrane | 3.811E-3 | 2 | 12 | 1 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| posttranslational protein targeting to membrane, translocation | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| posttranslational protein targeting to membrane | 2.859E-3 | 2 | 9 | 1 | 6292 |
| SRP-dependent cotranslational protein targeting to membrane, translocation | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| SRP-dependent cotranslational protein targeting to membrane | 6.6645E-3 | 2 | 21 | 1 | 6292 |
| cotranslational protein targeting to membrane | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| GPI anchor biosynthetic process | 8.8811E-3 | 2 | 28 | 1 | 6292 |
| phosphoinositide biosynthetic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
| GPI anchor metabolic process | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| GTPase regulator activity | 1.7614E-4 | 2 | 84 | 2 | 6292 |
| nucleoside-triphosphatase regulator activity | 2.256E-4 | 2 | 95 | 2 | 6292 |
| GTPase inhibitor activity | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| enzyme regulator activity | 1.0773E-3 | 2 | 207 | 2 | 6292 |
| ARF guanyl-nucleotide exchange factor activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| enzyme inhibitor activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |