| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.52088278878] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleotide-excision repair complex | 1.0611E-5 | 2 | 21 | 2 | 6292 |
| nucleotide-excision repair factor 1 complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| nucleotide-excision repair factor 3 complex | 2.224E-3 | 2 | 7 | 1 | 6292 |
| holo TFIIH complex | 3.1764E-3 | 2 | 10 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleotide-excision repair | 3.552E-5 | 2 | 38 | 2 | 6292 |
| DNA repair | 9.2646E-4 | 2 | 192 | 2 | 6292 |
| response to DNA damage stimulus | 1.4011E-3 | 2 | 236 | 2 | 6292 |
| nucleotide-excision repair, DNA duplex unwinding | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| cellular response to stress | 2.1173E-3 | 2 | 290 | 2 | 6292 |
| nucleotide-excision repair, DNA damage recognition | 2.224E-3 | 2 | 7 | 1 | 6292 |
| regulation of transcription from RNA polymerase II promoter, mitotic | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| negative regulation of transcription from RNA polymerase II promoter, mitotic | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| regulation of transcription, mitotic | 2.859E-3 | 2 | 9 | 1 | 6292 |
| negative regulation of transcription, mitotic | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular response to stimulus | 3.6193E-3 | 2 | 379 | 2 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| DNA geometric change | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| DNA duplex unwinding | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| zinc ion binding | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| damaged DNA binding | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| transition metal ion binding | 7.6148E-3 | 2 | 24 | 1 | 6292 |