| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.531134881015] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| PMC1 |
|
|
|
| VMA13 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| fungal-type vacuole membrane | 1.3647E-4 | 2 | 74 | 2 | 6292 |
| vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| fungal-type vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| lytic vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| storage vacuole | 6.2668E-4 | 2 | 158 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
| proton-transporting V-type ATPase, V1 domain | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| vacuolar proton-transporting V-type ATPase, V1 domain | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| proton-transporting two-sector ATPase complex, catalytic domain | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| vacuolar proton-transporting V-type ATPase complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| proton-transporting V-type ATPase complex | 4.7627E-3 | 2 | 15 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cellular cation homeostasis | 2.7588E-4 | 2 | 105 | 2 | 6292 |
| cation homeostasis | 2.974E-4 | 2 | 109 | 2 | 6292 |
| cellular chemical homeostasis | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| cellular ion homeostasis | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| cellular homeostasis | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| chemical homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
| ion homeostasis | 3.791E-4 | 2 | 123 | 2 | 6292 |
| calcium ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| cellular calcium ion homeostasis | 2.859E-3 | 2 | 9 | 1 | 6292 |
| divalent metal ion transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| homeostatic process | 4.1951E-3 | 2 | 408 | 2 | 6292 |
| metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cellular metal ion homeostasis | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| vacuolar acidification | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| intracellular pH reduction | 7.6148E-3 | 2 | 24 | 1 | 6292 |
| regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
| regulation of cellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| regulation of intracellular pH | 7.9314E-3 | 2 | 25 | 1 | 6292 |
| regulation of pH | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.