| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.540546730873] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi membrane | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| trans-Golgi network transport vesicle membrane | 2.224E-3 | 2 | 7 | 1 | 6292 |
| trans-Golgi network transport vesicle | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
| clathrin coated vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| transport vesicle membrane | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| Golgi-associated vesicle membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| clathrin-coated vesicle | 9.8303E-3 | 2 | 31 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transition metal ion transport | 4.5626E-5 | 2 | 43 | 2 | 6292 |
| metal ion transport | 8.3521E-5 | 2 | 58 | 2 | 6292 |
| cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| intracellular copper ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| calcium ion transport | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| manganese ion transport | 2.224E-3 | 2 | 7 | 1 | 6292 |
| divalent metal ion transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| copper ion transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
| secretory pathway | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.