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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.548602740251]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transcription elongation factor complex 1.2783E-5 2 23 2 6292
DSIF complex 6.3568E-4 2 2 1 6292
nucleoplasm part 1.5102E-3 2 245 2 6292
nucleoplasm 1.7541E-3 2 264 2 6292
Cdc73/Paf1 complex 2.5415E-3 2 8 1 6292
nuclear lumen 5.1728E-3 2 453 2 6292
nuclear chromosome, telomeric region 7.2981E-3 2 23 1 6292
chromosome, telomeric region 8.5646E-3 2 27 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA elongation from RNA polymerase II promoter 3.744E-5 2 39 2 6292
RNA elongation 5.0022E-5 2 45 2 6292
chromosome segregation 4.1068E-4 2 128 2 6292
chromatin organization 1.036E-3 2 203 2 6292
transcription from RNA polymerase II promoter 2.8267E-3 2 335 2 6292
histone methylation 6.3477E-3 2 20 1 6292
transcription, DNA-dependent 6.3792E-3 2 503 2 6292
RNA biosynthetic process 6.5067E-3 2 508 2 6292
protein amino acid alkylation 7.6148E-3 2 24 1 6292
protein amino acid methylation 7.6148E-3 2 24 1 6292
transcription 7.6839E-3 2 552 2 6292
chromosome organization 7.7677E-3 2 555 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA polymerase II transcription elongation factor activity 3.9411E-6 2 13 2 6292
transcription elongation regulator activity 8.6401E-6 2 19 2 6292
triplex DNA binding 3.1786E-4 2 1 1 6292
transcription regulator activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle