| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.568922035504] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| nucleoid | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| mitochondrial nucleoid | 1.6421E-5 | 2 | 26 | 2 | 6292 |
| mitochondrial matrix | 7.7811E-4 | 2 | 176 | 2 | 6292 |
| mitochondrial lumen | 7.7811E-4 | 2 | 176 | 2 | 6292 |
| mitochondrial oxoglutarate dehydrogenase complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| oxoglutarate dehydrogenase complex | 9.5344E-4 | 2 | 3 | 1 | 6292 |
| mitochondrial pyruvate dehydrogenase complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| pyruvate dehydrogenase complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| mitochondrial part | 5.6881E-3 | 2 | 475 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| 2-oxoglutarate metabolic process | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| organic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| oxoacid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| carboxylic acid metabolic process | 2.793E-3 | 2 | 333 | 2 | 6292 |
| cellular ketone metabolic process | 3.0157E-3 | 2 | 346 | 2 | 6292 |
| acetyl-CoA catabolic process | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| tricarboxylic acid cycle | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| acetyl-CoA metabolic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| coenzyme catabolic process | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| cofactor catabolic process | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| dicarboxylic acid metabolic process | 9.5139E-3 | 2 | 30 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor | 5.0527E-7 | 2 | 5 | 2 | 6292 |
| oxidoreductase activity, acting on the aldehyde or oxo group of donors | 1.5158E-5 | 2 | 25 | 2 | 6292 |
| oxoglutarate dehydrogenase (succinyl-transferring) activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| pyruvate dehydrogenase (acetyl-transferring) activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| pyruvate dehydrogenase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| oxidoreductase activity | 1.9877E-3 | 2 | 281 | 2 | 6292 |