YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.586640552942]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
KES1
  • cytoplasm
  • Golgi membrane
  • extrinsic to membrane
    		•
  • sterol transport
  • post-Golgi vesicle-mediated transport
  • endocytosis
  • exocytosis
    		•
  • phosphatidylinositol-4,5-bisphosphate binding
  • cholesterol binding
  • oxysterol binding
    		•
    SWH1
  • nuclear envelope
  • early endosome
  • endoplasmic reticulum
  • Golgi trans cisterna
    		•
  • sterol transport
  • endocytosis
  • exocytosis
    		•
  • oxysterol binding
  • phosphatidylinositol binding
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    Golgi apparatus part 3.5475E-4 2 119 2 6292
    Golgi apparatus 7.3441E-4 2 171 2 6292
    Golgi trans cisterna 1.5888E-3 2 5 1 6292
    early endosome 1.5888E-3 2 5 1 6292
    endomembrane system 3.9918E-3 2 398 2 6292
    Golgi stack 5.0798E-3 2 16 1 6292
    Golgi cisterna 5.0798E-3 2 16 1 6292
    organelle subcompartment 5.0798E-3 2 16 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    sterol transport 6.8716E-6 2 17 2 6292
    lipid transport 3.3651E-5 2 37 2 6292
    lipid localization 3.744E-5 2 39 2 6292
    exocytosis 5.2295E-5 2 46 2 6292
    secretion 7.2304E-5 2 54 2 6292
    secretion by cell 7.2304E-5 2 54 2 6292
    endocytosis 1.9342E-4 2 88 2 6292
    membrane invagination 2.2085E-4 2 94 2 6292
    membrane organization 9.8542E-4 2 198 2 6292
    cellular membrane organization 9.8542E-4 2 198 2 6292
    vesicle-mediated transport 2.9119E-3 2 340 2 6292
    macromolecule localization 3.9717E-3 2 397 2 6292
    establishment of localization in cell 9.0494E-3 2 599 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    sterol binding 1.819E-6 2 9 2 6292
    oxysterol binding 1.819E-6 2 9 2 6292
    steroid binding 1.819E-6 2 9 2 6292
    phosphoinositide binding 3.3651E-5 2 37 2 6292
    phospholipid binding 4.5626E-5 2 43 2 6292
    lipid binding 6.1895E-5 2 50 2 6292
    phosphatidylinositol-4,5-bisphosphate binding 3.1786E-4 2 1 1 6292
    cholesterol binding 3.1786E-4 2 1 1 6292
    phosphatidylinositol binding 3.1764E-3 2 10 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle