| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.588907747447] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| TORC1 complex | 7.579E-7 | 2 | 6 | 2 | 6292 |
| vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
| internal side of plasma membrane | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| extrinsic to internal side of plasma membrane | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| plasma membrane | 1.8077E-3 | 2 | 268 | 2 | 6292 |
| extrinsic to plasma membrane | 5.3968E-3 | 2 | 17 | 1 | 6292 |
| endosomal part | 7.2981E-3 | 2 | 23 | 1 | 6292 |
| endosome membrane | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| regulation of cell growth | 3.3348E-6 | 2 | 12 | 2 | 6292 |
| regulation of growth | 4.5979E-6 | 2 | 14 | 2 | 6292 |
| cell growth | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| regulation of cell size | 3.0847E-4 | 2 | 111 | 2 | 6292 |
| regulation of anatomical structure size | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| regulation of cellular component size | 3.2544E-4 | 2 | 114 | 2 | 6292 |
| growth | 5.275E-4 | 2 | 145 | 2 | 6292 |
| mitochondria-nucleus signaling pathway | 2.224E-3 | 2 | 7 | 1 | 6292 |
| fungal-type cell wall organization | 3.4937E-3 | 2 | 11 | 1 | 6292 |
| response to starvation | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| cellular response to starvation | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| regulation of biological quality | 7.6561E-3 | 2 | 551 | 2 | 6292 |
| G1 phase of mitotic cell cycle | 8.5646E-3 | 2 | 27 | 1 | 6292 |
| G1 phase | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| 1-phosphatidylinositol-3-kinase activity | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| phosphoinositide 3-kinase activity | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| lipid kinase activity | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| inositol or phosphatidylinositol kinase activity | 3.4937E-3 | 2 | 11 | 1 | 6292 |