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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.069] [SVM Score: 0.590845621301]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

transport vesicle 5.0022E-5 2 45 2 6292
coated vesicle 1.7194E-4 2 83 2 6292
cytoplasmic vesicle 2.8654E-4 2 107 2 6292
membrane-bounded vesicle 2.8654E-4 2 107 2 6292
cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
vesicle 3.0291E-4 2 110 2 6292
Golgi apparatus part 3.5475E-4 2 119 2 6292
Golgi apparatus 7.3441E-4 2 171 2 6292
trans-Golgi network transport vesicle 3.4937E-3 2 11 1 6292
integral to Golgi membrane 5.0798E-3 2 16 1 6292
intrinsic to Golgi membrane 5.0798E-3 2 16 1 6292
ER to Golgi transport vesicle 9.8303E-3 2 31 1 6292
clathrin-coated vesicle 9.8303E-3 2 31 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

Golgi vesicle transport 7.0879E-4 2 168 2 6292
cell wall polysaccharide biosynthetic process 2.859E-3 2 9 1 6292
cell wall chitin biosynthetic process 2.859E-3 2 9 1 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292
cell wall chitin metabolic process 3.1764E-3 2 10 1 6292
aminoglycan biosynthetic process 3.4937E-3 2 11 1 6292
chitin biosynthetic process 3.4937E-3 2 11 1 6292
cell wall polysaccharide metabolic process 3.811E-3 2 12 1 6292
aminoglycan metabolic process 4.1283E-3 2 13 1 6292
chitin metabolic process 4.1283E-3 2 13 1 6292
cell wall macromolecule biosynthetic process 6.9813E-3 2 22 1 6292
cellular component macromolecule biosynthetic process 6.9813E-3 2 22 1 6292
cellular cell wall macromolecule metabolic process 7.2981E-3 2 23 1 6292
cell wall macromolecule metabolic process 7.6148E-3 2 24 1 6292
intracellular transport 7.7118E-3 2 553 2 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292
Golgi to plasma membrane transport 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle