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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.59602902325]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

retrotransposon nucleocapsid 4.3024E-4 2 131 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA integration 3.1786E-4 2 1 1 6292
viral procapsid maturation 3.1786E-4 2 1 1 6292
viral assembly, maturation, egress, and release 3.1786E-4 2 1 1 6292
viral reproduction 3.1786E-4 2 1 1 6292
viral capsid assembly 3.1786E-4 2 1 1 6292
virion assembly 3.1786E-4 2 1 1 6292
developmental maturation 3.1786E-4 2 1 1 6292
viral reproductive process 3.1786E-4 2 1 1 6292
cellular component assembly involved in morphogenesis 3.1786E-4 2 1 1 6292
viral infectious cycle 3.1786E-4 2 1 1 6292
transposition, RNA-mediated 4.4352E-4 2 133 2 6292
transposition 4.987E-4 2 141 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA-directed DNA polymerase activity 2.4511E-4 2 99 2 6292
DNA-directed DNA polymerase activity 3.0291E-4 2 110 2 6292
DNA polymerase activity 3.312E-4 2 115 2 6292
ribonuclease activity 5.5711E-4 2 149 2 6292
nucleotidyltransferase activity 7.0879E-4 2 168 2 6292
peptidase activity 9.2646E-4 2 192 2 6292
nuclease activity 9.9543E-4 2 199 2 6292
ribonuclease H activity 1.5888E-3 2 5 1 6292
aspartic-type peptidase activity 2.224E-3 2 7 1 6292
aspartic-type endopeptidase activity 2.224E-3 2 7 1 6292
hydrolase activity, acting on ester bonds 2.929E-3 2 341 2 6292
RNA binding 3.3934E-3 2 367 2 6292
transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292
endoribonuclease activity, producing 5'-phosphomonoesters 5.7138E-3 2 18 1 6292
endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters 7.2981E-3 2 23 1 6292
ATP binding 7.6148E-3 2 24 1 6292
adenyl ribonucleotide binding 7.9314E-3 2 25 1 6292
endoribonuclease activity 8.5646E-3 2 27 1 6292
protein binding 9.4468E-3 2 612 2 6292
adenyl nucleotide binding 9.5139E-3 2 30 1 6292
purine nucleoside binding 9.8303E-3 2 31 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle