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Protein Overview: VPS36

Protein Complex Data

  PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
View Details Riffle et al. (2010) (Unpublished Data) SNF8 VPS36
View Details Krogan NJ, et al. (2006) ADH7 HCM1 OLA1 SNF8 VPS25 VPS36
View Details Qiu et al. (2008) DID4 SNF8 VPS20 VPS25 VPS36

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

  BAIT PREY HITS PUBLICATION
View Screen SST2 VPS36 2 Unpublished Fields Lab Data

Microscopy / Localization Data

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  PROTEIN(S) PUBLICATION
View Data VPS36 Huh WK, et al. (2003)

Protein Structure Data


[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..147] deduced N/A No confident structure predictions are available.
2 View Details [148..566] MSA 3.010891 View MSA. No confident structure predictions are available.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • transcription regulator activity
  • 4.95502209146398 bayes_pls_golite062009
  • DNA binding
  • 4.49877554292304 bayes_pls_golite062009
  • nucleic acid binding
  • 4.4138116788102 bayes_pls_golite062009
  • transcription factor activity
  • 3.78905634607011 bayes_pls_golite062009
  • transcription repressor activity
  • 3.35896772348591 bayes_pls_golite062009
  • binding
  • 3.09940998297931 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 2.10135825467854 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 1.97423148823534 bayes_pls_golite062009
  • transcription activator activity
  • 1.86787909680028 bayes_pls_golite062009
  • protein binding
  • 0.753698599635855 bayes_pls_golite062009
  • molecular transducer activity
  • 0.574575108509588 bayes_pls_golite062009
  • signal transducer activity
  • 0.574575108509588 bayes_pls_golite062009
  • specific transcriptional repressor activity
  • 0.51900654743421 bayes_pls_golite062009
  • transcription factor binding
  • 0.35726633913804 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 0.18158516638045 bayes_pls_golite062009
  • hydrolase activity
  • 0.140191206949582 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
  • 0.136726704233672 bayes_pls_golite062009
  • small conjugating protein ligase activity
  • 0.118016217031359 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.0384502189988831 bayes_pls_golite062009
    2 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle