| Protein: | VPS36 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 566 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS36.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..566] | [1..566] |
|
|
0.0 | [6..561] | [4..453] |
|
|
0.0 | [193..561] | [36..382] |
|
|
0.0 | [195..561] | [57..411] |
|
|
2.0E-93 | [279..561] | [1..257] |
|
Region A: Residues: [1-147] |
1 11 21 31 41 51
| | | | | |
1 MEYWHYVETT SSGQPLLREG EKDIFIDQSV GLYHGKSKIL QRQRGRIFLT SQRIIYIDDA 60
61 KPTQNSLGLE LDDLAYVNYS SGFLTRSPRL ILFFKDPSSK DELGKSAETA SADVVSTWVC 120
121 PICMVSNETQ GEFTKDTLPT PICINCG
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
| Term | Confidence | Notes |
| transcription regulator activity | 4.95502209146398 | bayes_pls_golite062009 |
| DNA binding | 4.49877554292304 | bayes_pls_golite062009 |
| nucleic acid binding | 4.4138116788102 | bayes_pls_golite062009 |
| transcription factor activity | 3.78905634607011 | bayes_pls_golite062009 |
| transcription repressor activity | 3.35896772348591 | bayes_pls_golite062009 |
| binding | 3.09940998297931 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.10135825467854 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.97423148823534 | bayes_pls_golite062009 |
| transcription activator activity | 1.86787909680028 | bayes_pls_golite062009 |
| protein binding | 0.753698599635855 | bayes_pls_golite062009 |
| molecular transducer activity | 0.574575108509588 | bayes_pls_golite062009 |
| signal transducer activity | 0.574575108509588 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.51900654743421 | bayes_pls_golite062009 |
| transcription factor binding | 0.35726633913804 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.18158516638045 | bayes_pls_golite062009 |
| hydrolase activity | 0.140191206949582 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.136726704233672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.118016217031359 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.0384502189988831 | bayes_pls_golite062009 |
|
Region A: Residues: [148-566] |
1 11 21 31 41 51
| | | | | |
1 VPADYELTKS SINCSNAIDP NANPQNQFGV NSENICPACT FANHPQIGNC EICGHRLPNA 60
61 SKVRSKLNRL NFHDSRVHIE LEKNSLARNK SSHSALSSSS STGSSTEFVQ LSFRKSDGVL 120
121 FSQATERALE NILTEKNKHI FNQNVVSVNG VDMRKGASSH EYNNEVPFIE TKLSRIGISS 180
181 LEKSRENQLL NNDILFNNAL TDLNKLMSLA TSIERLYKNS NITMKTKTLN LQDESTVNEP 240
241 KTRRPLLILD REKFLNKELF LDEIAREIYE FTLSEFKDLN SDTNYMIITL VDLYAMYNKS 300
301 MRIGTGLISP MEMREACERF EHLGLNELKL VKVNKRILCV TSEKFDVVKE KLVDLIGDNP 360
361 GSDLLRLTQI LSSNNSKSNW TLGILMEVLQ NCVDEGDLLI DKQLSGIYYY KNSYWPSHI
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
