Protein Overview: RPL34B

General Information:
Name(s) found:	RPL34B / YIL052C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|731810\|sp\|P40525.1\|RL34B_YEAST RecName: Full=60S ribosomal protein L34-B [NCBI NR] gi\|6322137\|ref\|NP_012212.1\| Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein; Rpl34bp [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S48427 ribosomal protein L34.e.B, cytosolic - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|557816\|emb\|CAA86170.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] 60S ribosomal protein L34-B OS=Saccharomyces cerevisiae GN=RPL34B PE=1 SV=1 [Swiss-Prot] (P40525) 60S ribosomal protein L34-B [Swiss-Prot] RPL34B Ribosomal protein L34.e [mips] Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein [SGD] RPL34B, Chr IX from 256224-256260,256733-257061, reverse complement [yeast_orfs2] Chr IX from 256224-256260,256733-257061, reverse complement [yeastorf3.fasta] Chr IX from 257061-257025,256552-256224, reverse complement [yeastorf5.fasta] RPL34B SGDID:S0001314, Chr IX from 257061-257025,256552-256224, reverse complement, Verified ORF [yeastflysequest.fasta] Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein [Saccharomyces cerevisiae]gi\|557816\|emb\|CAA86170.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|626886\|pir\|\|S484 [nrdb_11152004_Chlamydomonas] RPL34B SGDID:S000001314, Chr IX from 257061-257025,256552-256224, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] 60S ribosomal protein L34-B [nr-271106-contam.fasta] Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein; Rpl34bp [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] 60S ribosomal protein L34-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL34B PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] RPL34B SGDID:S000001314, Chr IX from 256554-256226,257063-257027, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein" [yeast-030211-contam.fasta] RPL34B SGDID:S000001314, Chr IX from 256554-256226,257063-257027, Genome Release 64-2-1, reverse complement, Verified ORF, "Ribosomal 60S subunit protein L34B; homologous to mammalian ribosomal protein L34, no bacterial homolog; RPL34B has a paralog, RPL34A, that arose from the whole genome duplication" [20141208_orf_trans.fasta] TR5369\|c0_g1_i1\|g.3644 ORF TR5369\|c0_g1_i1\|g.3644 TR5369\|c0_g1_i1\|m.3644 type:complete len:122 (+) TR5369\|c0_g1_i1:42-407(+) [DBVPG6044_S_cerevisiae-Sep2015-contam.fasta] YIL052C SGDID:S000001314, Chr IX from 256554-256226,257063-257027, Genome Release 64-1-1, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl34Ap and has similarity to rat L34 ribosomal protein" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta] asmbl_8985\|g.6366 ORF asmbl_8985\|g.6366 asmbl_8985\|m.6366 type:complete len:122 (+) asmbl_8985:32-397(+) [DBVPG6044_Trinity_v2_2_0_PASA_6May2016-contam.fasta] asmbl_8746\|g.6417 ORF asmbl_8746\|g.6417 asmbl_8746\|m.6417 type:complete len:122 (+) asmbl_8746:32-397(+) [Y12_Trinity_v2_2_0_PASA_6May2016-contam.fasta] ID=asmbl_8960\|g.5474 ORF ID=asmbl_8960\|g.5474 ID=asmbl_8960\|m.5474 type:complete len:122 (+) ID=asmbl_8960:32-397(+) [DBVPG6044_quiverGenomes_Trinity_v2_2_0_PASA_2June2016-contam.fasta] ID=asmbl_8751\|g.5383 ORF ID=asmbl_8751\|g.5383 ID=asmbl_8751\|m.5383 type:complete len:122 (+) ID=asmbl_8751:32-397(+) [Y12_quiver_Trinity_v2_2_0_PASA_2June2016-contam.fasta]
Organism:	Saccharomyces cerevisiae
Length:	121 amino acids
Gene Ontology:
Cellular Component:	ribonucleoprotein complex [IEA] cytoplasm [IEA] cytosolic large ribosomal subunit [TAS] ribosome [IEA] intracellular [IEA]
Biological Process:	telomere maintenance [IMP] translation [TAS]
Molecular Function:	structural constituent of ribosome [TAS]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MAQRVTFRRR NPYNTRSNKI KVVKTPGGIL RAQHVKKLAT RPKCGDCGSA LQGISTLRPR 60 61 QYATVSKTHK TVSRAYGGSR CANCVKERIV RAFLIEEQKI VKKVVKEQTE AAKKSEKKSK 120 121 K

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	(MIPS) Mewes HW, et al. (2004)		RPL10 RPL11A RPL11B RPL12B, RPL12A RPL13A RPL13B RPL14A RPL14B RPL15A RPL15B RPL16A RPL16B RPL17A RPL17B RPL18A, RPL18B RPL19B, RPL19A RPL1A, RPL1B RPL20A RPL20B RPL21A RPL21B RPL22A RPL22B RPL23B, RPL23A RPL24A RPL24B RPL25 RPL26A RPL26B RPL27A RPL27B RPL28 RPL29 RPL2A, RPL2B RPL3 RPL30 RPL31A RPL31B RPL32 RPL33A RPL33B RPL34A RPL34B RPL35A, RPL35B RPL36A RPL36B RPL37A RPL37B RPL38 RPL39 RPL40B, RPL40A RPL41A, RPL41B RPL42B, RPL42A RPL43B, RPL43A RPL4A RPL4B RPL5 RPL6A RPL6B RPL7A RPL7B RPL8A RPL8B RPL9A RPL9B RPP0 RPP1A RPP1B RPP2A RPP2B
View Details	Qiu et al. (2008)		RPL10 RPL11A RPL11B RPL12B, RPL12A RPL13A RPL13B RPL14A RPL14B RPL15A RPL15B RPL16A RPL16B RPL17A RPL17B RPL18A, RPL18B RPL19B, RPL19A RPL1A, RPL1B RPL20A RPL21A RPL21B RPL22A RPL23B, RPL23A RPL24A RPL24B RPL25 RPL26A RPL26B RPL27A RPL27B RPL28 RPL29 RPL2A, RPL2B RPL3 RPL30 RPL31A RPL31B RPL32 RPL33A RPL33B RPL34A RPL34B RPL35A, RPL35B RPL36A RPL36B RPL37A RPL37B RPL38 RPL39 RPL40B, RPL40A RPL41A, RPL41B RPL42B, RPL42A RPL43B, RPL43A RPL4A RPL4B RPL5 RPL6A RPL6B RPL7A RPL7B RPL8A RPL8B RPL9A RPL9B RPP0 RPP1A RPP1B RPP2A RPP2B RPS0A RPS10B RPS11A, RPS11B RPS13 RPS14A RPS14B RPS16B, RPS16A RPS17A RPS17B RPS18B, RPS18A RPS1A RPS1B RPS2 RPS20 RPS21A RPS22A RPS23B, RPS23A RPS24A, RPS24B RPS25A RPS25B RPS26B RPS27B RPS28A RPS28B RPS29A RPS29B RPS3 RPS30B, RPS30A RPS4B, RPS4A RPS5 RPS6A, RPS6B RPS7A RPS8B, RPS8A RPS9A RPS9B STM1

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	RPA135	his-HA tag on RPA135	Schneider, DA, et al. (2006)
View Run	MLP2	#32 Asynchronous Prep-No Phosphopeptide enrichment	Keck JM, et al. (2011)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

	PROTEIN(S)	PUBLICATION
View Data	RPL34B	Huh WK, et al. (2003)

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..121]	Pfam	67.173925	Ribosomal protein L34e No confident structure predictions are available.

Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle