YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL34B
Organism:	Saccharomyces cerevisiae
Length:	121 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL34B.

Description	E-value	Query Range	Subject Range
RL34_MOUSE - 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=1 SV=2 gi\|55715856 - gb\|AAH86096.1\| Unknown (protein for MGC:98475) [Xenopus laevis] gi\|55742885, gi\|... - ref\|NP_081000.1\| ribosomal protein L34 [Mus musculus], ref\|NP_001005859.1\| ribosomal protein L34 [M...	1.0E-37	[1..113]	[1..115]
gi\|34860562, gi\|... - ref\|XP_342343.1\| similar to ribosomal protein L34; 60S ribosomal protein L34 [Rattus norvegicus], g... gi\|194208532 - gi\|194208532\|ref\|XP_001503042.2\| PREDICTED: similar to ribosomal protein L34 [Equus caballus] gi\|119893569 - gi\|119893569\|ref\|XP_872717.2\| PREDICTED: ribosomal protein L34 [Bos taurus] gi\|114595604 - gi\|114595604\|ref\|XP_517387.2\| PREDICTED: similar to Ribosomal protein L34 [Pan troglodytes] ENSCJAT00000031116 - null gi\|73993472, gi\|... - gi\|73993472\|ref\|XP_850133.1\| PREDICTED: similar to ribosomal protein L34 [Canis familiaris], gi\|5710... gi\|60814025, gi\|... - gi\|61355240\|gb\|AAX41118.1\| ribosomal protein L34 [synthetic construct], gi\|60814025\|gb\|AAX36284.1\| r... tr\|M3WMR1\|M3WMR1... - Uncharacterized protein OS=Felis catus GN=RPL34 PE=4 SV=1 RPL34 - ribosomal protein L34 gi\|109075312, gi... - gi\|109149598\|ref\|XP_001083978.1\| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta], gi\|10...	2.0E-37	[1..113]	[1..115]
RL34_ICTPU - 60S ribosomal protein L34 OS=Ictalurus punctatus GN=rpl34 PE=3 SV=3	4.0E-37	[1..113]	[1..115]
gi\|854422 - gi\|854422\|emb\|CAA32574.1\| ribosomal protein L34 [Rattus rattus]	1.0E-36	[1..113]	[1..115]
RL34_PIG - 60S ribosomal protein L34 OS=Sus scrofa GN=RPL34 PE=3 SV=2	6.0E-36	[1..113]	[1..115]
rpl3401 - 60S ribosomal protein L34 RL34A_SCHPO - 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3401 PE=3 S...	5.0E-35	[1..113]	[1..112]
RL34_RAT - 60S ribosomal protein L34 OS=Rattus norvegicus GN=Rpl34 PE=1 SV=3	1.0E-34	[1..113]	[1..115]
gi\|14269399 - gi\|14269399\|gb\|AAK58051.1\| ribosomal protein L34-like protein [Ophiostoma novo-ulmi]	3.0E-31	[4..109]	[5..110]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRVTFRRR NPYNTRSNKI KVVKTPGGIL RAQHVKKLAT RPKCGDCGSA LQGISTLRPR  60
   61 QYATVSKTHK TVSRAYGGSR CANCVKERIV RAFLIEEQKI VKKVVKEQTE AAKKSEKKSK 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.173925
Match:	PF01199
Description:	Ribosomal protein L34e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits