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View Structure Prediction Details

Protein: RPL34B
Organism: Saccharomyces cerevisiae
Length: 121 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL34B.

Description E-value Query
Range
Subject
Range
RL34_MOUSE - 60S ribosomal protein L34 OS=Mus musculus GN=Rpl34 PE=1 SV=2
gi|55715856 - gb|AAH86096.1| Unknown (protein for MGC:98475) [Xenopus laevis]
gi|55742885, gi|... - ref|NP_081000.1| ribosomal protein L34 [Mus musculus], ref|NP_001005859.1| ribosomal protein L34 [M...
1.0E-37 [1..113] [1..115]
gi|34860562, gi|... - ref|XP_342343.1| similar to ribosomal protein L34; 60S ribosomal protein L34 [Rattus norvegicus], g...
gi|194208532 - gi|194208532|ref|XP_001503042.2| PREDICTED: similar to ribosomal protein L34 [Equus caballus]
gi|119893569 - gi|119893569|ref|XP_872717.2| PREDICTED: ribosomal protein L34 [Bos taurus]
gi|114595604 - gi|114595604|ref|XP_517387.2| PREDICTED: similar to Ribosomal protein L34 [Pan troglodytes]
ENSCJAT00000031116 - null
gi|73993472, gi|... - gi|73993472|ref|XP_850133.1| PREDICTED: similar to ribosomal protein L34 [Canis familiaris], gi|5710...
tr|M3WMR1|M3WMR1... - Uncharacterized protein OS=Felis catus GN=RPL34 PE=4 SV=1
gi|60814025, gi|... - gi|61355240|gb|AAX41118.1| ribosomal protein L34 [synthetic construct], gi|60814025|gb|AAX36284.1| r...
gi|109075312, gi... - gi|109149598|ref|XP_001083978.1| PREDICTED: similar to ribosomal protein L34 [Macaca mulatta], gi|10...
RPL34 - ribosomal protein L34
2.0E-37 [1..113] [1..115]
RL34_ICTPU - 60S ribosomal protein L34 OS=Ictalurus punctatus GN=rpl34 PE=3 SV=3
4.0E-37 [1..113] [1..115]
gi|854422 - gi|854422|emb|CAA32574.1| ribosomal protein L34 [Rattus rattus]
1.0E-36 [1..113] [1..115]
RL34_PIG - 60S ribosomal protein L34 OS=Sus scrofa GN=RPL34 PE=3 SV=2
6.0E-36 [1..113] [1..115]
rpl3401 - 60S ribosomal protein L34
RL34A_SCHPO - 60S ribosomal protein L34-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl3401 PE=3 S...
5.0E-35 [1..113] [1..112]
RL34_RAT - 60S ribosomal protein L34 OS=Rattus norvegicus GN=Rpl34 PE=1 SV=3
1.0E-34 [1..113] [1..115]
gi|14269399 - gi|14269399|gb|AAK58051.1| ribosomal protein L34-like protein [Ophiostoma novo-ulmi]
3.0E-31 [4..109] [5..110]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRVTFRRR NPYNTRSNKI KVVKTPGGIL RAQHVKKLAT RPKCGDCGSA LQGISTLRPR  60
   61 QYATVSKTHK TVSRAYGGSR CANCVKERIV RAFLIEEQKI VKKVVKEQTE AAKKSEKKSK 120
  121 K

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 67.173925
Match: PF01199
Description: Ribosomal protein L34e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle