YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YCR087W

General Information:
Name(s) found: YCR087W [SGD]
Description(s) found:
Found 18 descriptions.
SHOW ALL
  • [DUBIOUS] Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; partially overlaps uncharacterized gene YCR087C-A; YCR087W is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 171 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIYLHIKFR LFLCIPDLPL RIHNQTFQEG LFCPFILHGF QNFVQRLALV KLDTVRGLFH  60
   61 FLCLLDHRLL HFLCRSCHWL VLVLLLLLLL LLLLLLLLVA LVQRFLVLLV LADARRVILV 120
  121 THAIFKRLGA IYACIVRVRT SIIMLFGILL GHSIITHLTV ERNHPVITNI S

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) CDC33 CKA1 CKA2 CKB1 ESF1 ESF2 HTB1 IMD3 LAA1 LHP1 MSS116 NOP12 PMA1 RPF2 YCR087W YDR102C YRA1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run BOI1 Sample boi1 with gst from october 2005 McCusker D, et al (2007)
    View Run BOI1 Sample bob1 (2nd set) from october 2005 McCusker D, et al (2007)
    View Run BOI2 Boi 2 gst control McCusker D, et al (2007)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen TEM1 YCR087W 2 Uetz P, et al. (2000)
    View Screen SWI5 YCR087W 2 Unpublished Fields Lab Data
    View Screen PXR1 YCR087W 1 Unpublished Fields Lab Data
    View Screen YHR022C YCR087W 1 Unpublished Fields Lab Data
    View Screen LOS1 YCR087W 1 Unpublished Fields Lab Data
    View Screen RED1 YCR087W 1 Unpublished Fields Lab Data
    View Screen APC5 YCR087W 1 Unpublished Fields Lab Data
    View Screen YCR087W GEP4 1 Unpublished Fields Lab Data
    View Screen VIK1 YCR087W 1 Unpublished Fields Lab Data
    View Screen YCR087W NOP9 1 Unpublished Fields Lab Data
    View Screen YCR087W PXA2 1 Unpublished Fields Lab Data
    View Screen YCR087W HSP104 1 Unpublished Fields Lab Data
    View Screen YCR087W ASE1 1 Unpublished Fields Lab Data
    View Screen YCR087W VPS4 1 Unpublished Fields Lab Data
    View Screen PRP42 YCR087W 1 Unpublished Fields Lab Data
    View Screen SXM1 YCR087W 1 Unpublished Fields Lab Data
    View Screen YPT31 YCR087W 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..171] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle