| Protein: | NTG2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 380 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NTG2.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-95 | [1..380] | [1..380] |
|
|
5.0E-76 | [11..342] | [38..361] |
|
|
8.0E-64 | [130..379] | [12..251] |
|
|
3.0E-63 | [127..379] | [7..249] |
|
|
3.0E-62 | [130..379] | [12..251] |
|
|
1.0E-61 | [130..379] | [12..252] |
|
Region A: Residues: [1-97] |
1 11 21 31 41 51
| | | | | |
1 MREESRSRKR KHIPVDIEEV EVRSKYFKKN ERTVELVKEN KINKDLQNYG GVNIDWIKAL 60
61 KPIEYFEWIE SRTCDDPRTW GRPITKEEMI NDSGAKV
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.484 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.468 | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.343 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.464 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.327 | a.37.1 | A DNA-binding domain in eukaryotic transcription factors |
| View | Download | 0.554 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.537 | c.58.1 | Aminoacid dehydrogenase-like, N-terminal domain |
| View | Download | 0.463 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.433 | d.110.3 | PYP-like sensor domain (PAS domain) |
| View | Download | 0.408 | a.1.1 | Globin-like |
| View | Download | 0.322 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.296 | d.95.2 | Homing endonucleases |
| View | Download | 0.284 | a.177.1 | Sigma2 domain of RNA polymerase sigma factors |
| View | Download | 0.280 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.271 | d.88.1 | SRF-like |
| View | Download | 0.252 | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.244 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.240 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.236 | a.28.1 | ACP-like |
|
Region A: Residues: [98-140] |
1 11 21 31 41 51
| | | | | |
1 PESFLPIYNR VRLMRSKVKT PVDAMGCSMI PVLVSNKCGI PSE
|
|
Region B: Residues: [250-380] |
1 11 21 31 41 51
| | | | | |
1 GYLTLQKGWG LIAGICVDVH VHRLCKMWNW VDPIKCKTAE HTRKELQVWL PHSLWYEINT 60
61 VLVGFGQLIC MARGKRCDLC LANDVCNARN EKLIESSKFH QLEDKEDIEK VYSHWLDTVT 120
121 NGITTERHKK K
|
| Detection Method: | |
| Confidence: | 170.927757 |
| Match: | 2abk__ |
| Description: | Endonuclease III |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA N-glycosylase activity | 4.8124964619976 | bayes_pls_golite062009 |
| hydrolase activity, hydrolyzing N-glycosyl compounds | 4.26870112679392 | bayes_pls_golite062009 |
| DNA-(apurinic or apyrimidinic site) lyase activity | 3.71152530486175 | bayes_pls_golite062009 |
| oxidized base lesion DNA N-glycosylase activity | 2.49872706126491 | bayes_pls_golite062009 |
| hydrolase activity | 2.39042189031819 | bayes_pls_golite062009 |
| hydrolase activity, acting on glycosyl bonds | 2.24777884454113 | bayes_pls_golite062009 |
| catalytic activity | 2.13345932727422 | bayes_pls_golite062009 |
| alkylbase DNA N-glycosylase activity | 1.5832578018127 | bayes_pls_golite062009 |
| DNA binding | 1.44394874535958 | bayes_pls_golite062009 |
| 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity | 1.41538804527379 | bayes_pls_golite062009 |
| nucleic acid binding | 1.36800347239439 | bayes_pls_golite062009 |
| damaged DNA binding | 1.32391480975295 | bayes_pls_golite062009 |
| binding | 1.15752946565805 | bayes_pls_golite062009 |
| DNA-3-methyladenine glycosylase I activity | 1.06383943982125 | bayes_pls_golite062009 |
| oxidized pyrimidine base lesion DNA N-glycosylase activity | 0.889914753262716 | bayes_pls_golite062009 |
| uracil DNA N-glycosylase activity | 0.879508131574476 | bayes_pls_golite062009 |
| oxidized purine base lesion DNA N-glycosylase activity | 0.789032002944782 | bayes_pls_golite062009 |
| purine-specific mismatch base pair DNA N-glycosylase activity | 0.68578837518217 | bayes_pls_golite062009 |
| mismatch base pair DNA N-glycosylase activity | 0.661651574677137 | bayes_pls_golite062009 |
| transcription regulator activity | 0.493252955870142 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32094102946624 | bayes_pls_golite062009 |
| protein binding | 0.0921713980805489 | bayes_pls_golite062009 |
| carbon-oxygen lyase activity | 0.0676784802238829 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.0420287478494503 | bayes_pls_golite062009 |
|
Region A: Residues: [141-249] |
1 11 21 31 41 51
| | | | | |
1 KVDPKNFRLQ FLIGTMLSAQ TRDERMAQAA LNITEYCLNT LKIAEGITLD GLLKIDEPVL 60
61 ANLIRCVSFY TRKANFIKRT AQLLVDNFDS DIPYDIEGIL SLPGVGPKM
|
| Detection Method: | |
| Confidence: | 170.927757 |
| Match: | 2abk__ |
| Description: | Endonuclease III |
| Matching Structure (courtesy of the PDB): |
|
