From Publication: | Krogan N. J. et al. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature. 2006 Mar 30;440(7084):637-43. Epub 2006 Mar 22. |
Notes: | From the published set of core protein complex predictions. |
Complex Size: | 16 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
transcription elongation factor complex | 3.5605E-14 | 16 | 23 | 7 | 6292 |
Cdc73/Paf1 complex | 2.9682E-12 | 16 | 8 | 5 | 6292 |
DNA-directed RNA polymerase II, holoenzyme | 1.8874E-7 | 16 | 56 | 5 | 6292 |
nucleoplasm part | 1.0555E-6 | 16 | 245 | 7 | 6292 |
nucleoplasm | 1.7482E-6 | 16 | 264 | 7 | 6292 |
FACT complex | 6.0632E-6 | 16 | 2 | 2 | 6292 |
nuclear replication fork | 1.4984E-5 | 16 | 20 | 3 | 6292 |
nuclear lumen | 6.1834E-5 | 16 | 453 | 7 | 6292 |
nuclear part | 7.5837E-5 | 16 | 1103 | 10 | 6292 |
organelle lumen | 8.4009E-5 | 16 | 660 | 8 | 6292 |
intracellular organelle lumen | 8.4009E-5 | 16 | 660 | 8 | 6292 |
alpha DNA polymerase:primase complex | 1.2639E-4 | 16 | 7 | 2 | 6292 |
membrane-enclosed lumen | 1.2833E-4 | 16 | 700 | 8 | 6292 |
replication fork | 1.4582E-4 | 16 | 42 | 3 | 6292 |
protein-DNA complex | 3.6312E-4 | 16 | 57 | 3 | 6292 |
protein complex | 6.7212E-4 | 16 | 1137 | 9 | 6292 |
nuclear chromatin | 7.529E-4 | 16 | 73 | 3 | 6292 |
chromatin | 8.8002E-4 | 16 | 77 | 3 | 6292 |
replisome | 9.059E-4 | 16 | 18 | 2 | 6292 |
nuclear replisome | 9.059E-4 | 16 | 18 | 2 | 6292 |
nucleus | 3.1363E-3 | 16 | 2041 | 11 | 6292 |
replication fork protection complex | 5.0798E-3 | 16 | 2 | 1 | 6292 |
intracellular organelle part | 8.3508E-3 | 16 | 2282 | 11 | 6292 |
organelle part | 8.3508E-3 | 16 | 2282 | 11 | 6292 |
macromolecular complex | 9.6949E-3 | 16 | 1635 | 9 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
RNA polymerase II transcription elongation factor activity | 1.5832E-13 | 16 | 13 | 6 | 6292 |
transcription elongation regulator activity | 2.4827E-12 | 16 | 19 | 6 | 6292 |
transcription regulator activity | 9.2938E-6 | 16 | 339 | 7 | 6292 |
triplex DNA binding | 2.5429E-3 | 16 | 1 | 1 | 6292 |
trichothecene 3-O-acetyltransferase activity | 2.5429E-3 | 16 | 1 | 1 | 6292 |
RNA polymerase II transcription termination factor activity | 2.5429E-3 | 16 | 1 | 1 | 6292 |
hydroxyacylglutathione hydrolase activity | 5.0798E-3 | 16 | 2 | 1 | 6292 |
D-arabinose 1-dehydrogenase [NAD(P)+] activity | 5.0798E-3 | 16 | 2 | 1 | 6292 |
transcription termination factor activity | 5.0798E-3 | 16 | 2 | 1 | 6292 |