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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

NuA4 histone acetyltransferase complex 7.6616E-11 5 14 4 6292
H4/H2A histone acetyltransferase complex 7.6616E-11 5 14 4 6292
histone acetyltransferase complex 1.0351E-8 5 44 4 6292
nuclear chromatin 8.2682E-8 5 73 4 6292
chromatin 1.0275E-7 5 77 4 6292
Swr1 complex 1.0934E-7 5 15 3 6292
nuclear chromosome part 3.9359E-6 5 190 4 6292
nuclear chromosome 8.1644E-6 5 228 4 6292
chromosomal part 9.5303E-6 5 237 4 6292
nucleoplasm part 1.0881E-5 5 245 4 6292
nucleoplasm 1.466E-5 5 264 4 6292
chromosome 1.7002E-5 5 274 4 6292
chromatin remodeling complex 3.6938E-5 5 99 3 6292
nuclear lumen 1.2511E-4 5 453 4 6292
nuclear part 1.6432E-4 5 1103 5 6292
organelle lumen 5.503E-4 5 660 4 6292
intracellular organelle lumen 5.503E-4 5 660 4 6292
membrane-enclosed lumen 6.9283E-4 5 700 4 6292
non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
intracellular non-membrane-bounded organelle 2.3579E-3 5 959 4 6292
Piccolo NuA4 histone acetyltransferase complex 2.3825E-3 5 3 1 6292
nucleus 3.5796E-3 5 2041 5 6292
protein complex 4.5433E-3 5 1137 4 6292
organelle part 6.2578E-3 5 2282 5 6292
intracellular organelle part 6.2578E-3 5 2282 5 6292
Ino80 complex 8.7135E-3 5 11 1 6292
DNA helicase complex 8.7135E-3 5 11 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

chromatin modification 1.28E-8 5 168 5 6292
DNA repair 2.5145E-8 5 192 5 6292
chromatin organization 3.3318E-8 5 203 5 6292
chromatin remodeling 6.1904E-8 5 68 4 6292
response to DNA damage stimulus 7.125E-8 5 236 5 6292
cellular response to stress 2.0123E-7 5 290 5 6292
cellular response to stimulus 7.7346E-7 5 379 5 6292
histone acetylation 1.7071E-6 5 36 3 6292
response to stress 3.0183E-6 5 497 5 6292
protein amino acid acetylation 3.6208E-6 5 46 3 6292
chromosome organization 5.2525E-6 5 555 5 6292
DNA metabolic process 6.8404E-6 5 585 5 6292
protein amino acid acylation 7.7299E-6 5 59 3 6292
histone exchange 2.2679E-5 5 10 2 6292
covalent chromatin modification 2.5912E-5 5 88 3 6292
histone modification 2.5912E-5 5 88 3 6292
response to stimulus 2.6437E-5 5 766 5 6292
ATP-dependent chromatin remodeling 1.6296E-4 5 26 2 6292
organelle organization 1.8302E-4 5 1127 5 6292
nucleosome organization 2.0338E-4 5 29 2 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular component organization 1.0001E-3 5 1582 5 6292
post-translational protein modification 1.6626E-3 5 357 3 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
protein modification process 4.3922E-3 5 499 3 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
macromolecule modification 6.4022E-3 5 569 3 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent 5'-3' DNA helicase activity 5.552E-3 5 7 1 6292
5'-3' DNA helicase activity 6.3431E-3 5 8 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle