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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 10 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.4588E-15 10 211 10 6292
nuclear lumen 3.41E-12 10 453 10 6292
organelle lumen 1.5167E-10 10 660 10 6292
intracellular organelle lumen 1.5167E-10 10 660 10 6292
membrane-enclosed lumen 2.7426E-10 10 700 10 6292
non-membrane-bounded organelle 6.5007E-9 10 959 10 6292
intracellular non-membrane-bounded organelle 6.5007E-9 10 959 10 6292
nuclear part 2.6498E-8 10 1103 10 6292
Noc1p-Noc2p complex 2.2737E-6 10 2 2 6292
nucleus 1.2708E-5 10 2041 10 6292
Noc complex 2.2679E-5 10 5 2 6292
intracellular organelle part 3.8887E-5 10 2282 10 6292
organelle part 3.8887E-5 10 2282 10 6292
preribosome, large subunit precursor 8.1369E-5 10 9 2 6292
90S preribosome 3.0531E-4 10 17 2 6292
preribosome 1.2414E-3 10 34 2 6292
nucleolar part 2.1703E-3 10 45 2 6292
Noc2p-Noc3p complex 3.1764E-3 10 2 1 6292
membrane-bounded organelle 5.9511E-3 10 3771 10 6292
intracellular membrane-bounded organelle 5.9511E-3 10 3771 10 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.2334E-13 10 346 10 6292
ribonucleoprotein complex biogenesis 4.9117E-13 10 374 10 6292
ribosome assembly 1.7741E-10 10 64 6 6292
ribosomal large subunit biogenesis 1.9534E-10 10 65 6 6292
cellular component biogenesis 2.5149E-10 10 694 10 6292
organelle assembly 2.8288E-10 10 69 6 6292
ribonucleoprotein complex assembly 1.6615E-9 10 92 6 6292
ribosomal large subunit assembly 2.2473E-9 10 41 5 6292
ribosomal subunit assembly 1.0335E-8 10 55 5 6292
cellular macromolecular complex assembly 1.0295E-7 10 182 6 6292
cellular macromolecular complex subunit organization 8.3957E-7 10 259 6 6292
macromolecular complex assembly 1.3586E-6 10 281 6 6292
macromolecular complex subunit organization 5.5349E-6 10 357 6 6292
cellular component assembly 8.5951E-6 10 385 6 6292
rRNA processing 8.8893E-4 10 128 3 6292
rRNA metabolic process 1.0834E-3 10 137 3 6292
organelle organization 3.5469E-3 10 1127 6 6292
ncRNA processing 3.9518E-3 10 215 3 6292
ncRNA metabolic process 6.5282E-3 10 257 3 6292
regulation of transcription, mating-type specific 7.9239E-3 10 5 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5S rRNA binding 2.2737E-6 10 2 2 6292
ATP-dependent RNA helicase activity 9.2777E-6 10 28 3 6292
RNA-dependent ATPase activity 1.034E-5 10 29 3 6292
RNA helicase activity 3.2133E-5 10 42 3 6292
ATP-dependent helicase activity 4.817E-5 10 48 3 6292
purine NTP-dependent helicase activity 4.817E-5 10 48 3 6292
helicase activity 2.4849E-4 10 83 3 6292
rRNA binding 2.6962E-4 10 16 2 6292
ATPase activity, coupled 1.3822E-3 10 149 3 6292
7S RNA binding 1.5893E-3 10 1 1 6292
RNA binding 1.8047E-3 10 367 4 6292
ATPase activity 3.747E-3 10 211 3 6292
rRNA primary transcript binding 7.9239E-3 10 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle