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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 11 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 1.558E-14 11 211 10 6292
nuclear lumen 3.5105E-11 11 453 10 6292
non-membrane-bounded organelle 9.8204E-10 11 959 11 6292
intracellular non-membrane-bounded organelle 9.8204E-10 11 959 11 6292
organelle lumen 1.5115E-9 11 660 10 6292
intracellular organelle lumen 1.5115E-9 11 660 10 6292
membrane-enclosed lumen 2.7156E-9 11 700 10 6292
nuclear part 2.4537E-7 11 1103 10 6292
preribosome, large subunit precursor 3.321E-7 11 9 3 6292
Noc1p-Noc2p complex 2.779E-6 11 2 2 6292
nucleus 4.1084E-6 11 2041 11 6292
preribosome 2.31E-5 11 34 3 6292
Noc complex 2.771E-5 11 5 2 6292
intracellular organelle part 2.8711E-4 11 2282 10 6292
organelle part 2.8711E-4 11 2282 10 6292
90S preribosome 3.7257E-4 11 17 2 6292
nucleolar part 2.6406E-3 11 45 2 6292
Noc2p-Noc3p complex 3.4937E-3 11 2 1 6292
membrane-bounded organelle 3.5629E-3 11 3771 11 6292
intracellular membrane-bounded organelle 3.5629E-3 11 3771 11 6292
intracellular organelle 8.2563E-3 11 4070 11 6292
organelle 8.2787E-3 11 4071 11 6292
ribonucleoprotein complex 9.1283E-3 11 514 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.3373E-12 11 346 10 6292
ribonucleoprotein complex biogenesis 5.1183E-12 11 374 10 6292
cellular component biogenesis 2.4926E-9 11 694 10 6292
ribosomal large subunit biogenesis 4.4335E-8 11 65 5 6292
ribosome assembly 3.046E-6 11 64 4 6292
organelle assembly 4.1259E-6 11 69 4 6292
ribonucleoprotein complex assembly 1.3063E-5 11 92 4 6292
ribosomal large subunit assembly 4.0875E-5 11 41 3 6292
rRNA metabolic process 6.305E-5 11 137 4 6292
ribosomal subunit assembly 9.9258E-5 11 55 3 6292
cellular macromolecular complex assembly 1.9063E-4 11 182 4 6292
ncRNA metabolic process 7.1489E-4 11 257 4 6292
cellular macromolecular complex subunit organization 7.362E-4 11 259 4 6292
establishment of ribosome localization 8.8271E-4 11 26 2 6292
ribosome localization 8.8271E-4 11 26 2 6292
ribosomal subunit export from nucleus 8.8271E-4 11 26 2 6292
macromolecular complex assembly 1.0016E-3 11 281 4 6292
rRNA processing 1.2042E-3 11 128 3 6292
macromolecular complex subunit organization 2.4447E-3 11 357 4 6292
cellular component assembly 3.2264E-3 11 385 4 6292
establishment of organelle localization 3.9232E-3 11 55 2 6292
ncRNA processing 5.2979E-3 11 215 3 6292
regulation of transcription, mating-type specific 8.7135E-3 11 5 1 6292
organelle localization 9.1655E-3 11 85 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5S rRNA binding 2.779E-6 11 2 2 6292
RNA binding 2.2654E-4 11 367 5 6292
rRNA binding 3.2905E-4 11 16 2 6292
7S RNA binding 1.7483E-3 11 1 1 6292
binding 2.3113E-3 11 1294 7 6292
nucleic acid binding 3.5073E-3 11 666 5 6292
rRNA primary transcript binding 8.7135E-3 11 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle