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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 7.7406E-5 8 211 4 6292
non-membrane-bounded organelle 2.6233E-4 8 959 6 6292
intracellular non-membrane-bounded organelle 2.6233E-4 8 959 6 6292
nuclear lumen 1.4695E-3 8 453 4 6292
organelle lumen 5.9438E-3 8 660 4 6292
intracellular organelle lumen 5.9438E-3 8 660 4 6292
cytosolic ribosome 6.7076E-3 8 101 2 6292
membrane-enclosed lumen 7.3614E-3 8 700 4 6292
cytosolic part 9.6731E-3 8 122 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 5.2727E-4 8 346 4 6292
ribonucleoprotein complex biogenesis 7.1014E-4 8 374 4 6292
GTP biosynthetic process 2.5415E-3 8 2 1 6292
regulation of transcription, mating-type specific 6.3431E-3 8 5 1 6292
cellular component biogenesis 7.1352E-3 8 694 4 6292
GTP metabolic process 8.8705E-3 8 7 1 6292
translation 9.4607E-3 8 376 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RNA binding 3.1798E-5 8 367 5 6292
nucleic acid binding 3.1964E-5 8 666 6 6292
rRNA binding 1.6826E-4 8 16 2 6292
7S RNA binding 1.2715E-3 8 1 1 6292
binding 1.4278E-3 8 1294 6 6292
5S rRNA binding 2.5415E-3 8 2 1 6292
IMP dehydrogenase activity 3.8101E-3 8 3 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle