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Protein Overview: pita-PB

General Information:
Name(s) found: pita-PB / FBpp0072022 [FlyBase]
Description(s) found:
Found 18 descriptions.
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  • The gene pita is referred to in FlyBase by the symbol Dmel\pita (CG3941, FBgn0034878). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:19436488..19442241. It has the cytological map location 59E3. There is experimental evidence that it has the molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: DNA replication; DNA endoreduplication. 26 alleles are reported. The phenotypes of these alleles are annotated with: larval salivary gland; condensed nuclear chromosome; mitotic anaphase; spindle; imaginal disc; G2 phase of mitotic cell cycle; mitotic metaphase; larval tracheal system. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 623 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: DNA replication [IMP]
    DNA endoreduplication [IMP]
    mitosis [NAS]
    Molecular Function: DNA binding [IDA]
    zinc ion binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGHICLECR LLFEHCYRFK QMCKRAETLL RQYPLTGNWP SPLEKPRAPM TMVASKKLLV  60
   61 VPAKTAEPSE TPKKLLNTMA KSSSQVIIED VQVLESAMVT PRTVAGSSPV PRRSHAYELK 120
  121 VDNNQELSMD DVQSMLEDMA SELEKEFPDI PQKASPVKPK VLNKSSIRIL NKGPAAPVEP 180
  181 RLATPKVKRD DSGNVAIVTE VLDSDLPLDD QDDPTKNAEK VATDVFPCPD CERSFPLQQL 240
  241 LEIHRLNHTR SRSFQCLLCE KSFFSKYDLA KHNFVHTGER PFKCAICSKA FTRKALLHRH 300
  301 ERTHTDVPKF ICVYCEKPFL SRQEMEKHAE RHQKKRPFQC GVCTKSFAFK QGLERHETVH 360
  361 STNLPFPCQH CERSFSTASK LARHLVAHAG KRAYPCKYCH KSYMLSHHLS RHLRTHTQTS 420
  421 DASFVCSECK VSYSNYNDLL DHALIHATAS LKCPMCRKQI EDIDSVESHM DQHKQSERHA 480
  481 CEFCDHIFLT QKCLQRHIED DHVVEMEPYQ NEFEDDGEGE GGVDEKEEHL DDFEDMDNVK 540
  541 QEEFVTEYLE DDALYEDHLD DSDESFTPPP PKQRKTNPPK DAQQSVRQTR SRDAQRITQK 600
  601 TGKNEGKPHH KLERNLKNRR SAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] deduced N/A No confident structure predictions are available.
    2 View Details [69..132] MSA 1.297996 View MSA. No confident structure predictions are available.
    3 View Details [133..376] PSI-BLAST 62.221849 No description for 2i13A was found.
    4 View Details [377..434] FFAS03 4.78 TATA box-binding zinc finger, TATAZF
    5 View Details [435..568] PSI-BLAST 20.154902 Transcription factor IIIA, TFIIIA
    6 View Details [569..623] PSI-BLAST 20.39794 Ying-yang 1 (yy1, zinc finger domain)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • transcription regulator activity
    		•  4.70988788192472 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.58713908116892 bayes_pls_golite062009
  • DNA binding
    		•  4.56219307357342 bayes_pls_golite062009
  • transcription factor activity
    		•  3.50954949535763 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.27542149084008 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.22082323675675 bayes_pls_golite062009
  • binding
    		•  3.10743787485868 bayes_pls_golite062009
  • transcription activator activity
    		•  2.19952417915035 bayes_pls_golite062009
  • chromatin binding
    		•  2.18464662431232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.63161912031789 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.48624530884061 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.42975942698743 bayes_pls_golite062009
  • transcription factor binding
    		•  1.39608963544799 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.34049786451995 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.18599503594288 bayes_pls_golite062009
  • protein binding
    		•  1.00484935878505 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.77874411480713 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.311339098303136 bayes_pls_golite062009
  • catalytic activity
    		•  0.245893663605433 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle