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Protein Overview: gi|84796203, gi|...

General Information:
Name(s) found: gi|85816258 [NCBI NR]
gi|84796203 [NCBI NR]
gi|73621137 [NCBI NR]
Description(s) found:
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  • gi|85816258|ref|NP_733244.4| La related protein, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|84796203|gb|AAN14138.4| La related protein, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|73621137|sp|Q9VAW5.4|LARP_DROME RecName: Full=La-related protein; AltName: Full=dlarp [NCBI NR]
  • La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=4 [Swiss-Prot]
  • (Q8IMM4) CG14066-PC [DrosMelano7227.FASTAC.txt]
  • La related protein CG14066-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG14066-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • La-related protein (dlarp) [nr-271106-contam.fasta]
  • Isoform C of La-related protein OS=Drosophila melanogaster GN=larp [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • Isoform of Q9VAW5, Isoform C of La-related protein 1 OS=Drosophila melanogaster GN=larp [DROME.fasta.20160308]
    • Organism: Drosophila melanogaster
    Length: 1403 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDA]
    mitochondrion [IDA]
    cytosol [IDA]
    Biological Process: mitochondrion inheritance [IMP]
    spindle assembly [IMP]
    centrosome separation [IMP]
    mitotic chromosome condensation [IMP]
    autophagic cell death [IEP]
    male meiosis [IMP]
    spindle assembly involved in male meiosis [IMP]
    syncytial blastoderm mitotic cell cycle [IMP]
    salivary gland cell autophagic cell death [IEP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKQSGSPK AGTSPLDKRV LQPKAQQQQQ QTKQTASQNN NAQNTASNKK TQQQQQPQQG  60
   61 ATTTTQTTTA AAAAATAAAA ATAATTSAAA ATSSAAAVPA ATTETATTTT VDASQADALA 120
  121 KVVVKDKKKV NQKASDFSNV GDWPTLIGGT SGSGKATSNE PKRNPTKKQQ SAKTAAAVAA 180
  181 SSNTTSSEVA TESNVAGTTS SSNSNPSSST TTTNTTTNSQ ATTAPVASTS HDAKAQRDAE 240
  241 PAANSAAGTT GTAAGPALTK KIPKHKWRPL PIDLAKSSRP KPIGGRPNRR FSDDIADQRR 300
  301 PPRVYHDRQP GAGGAGVESR HPHAGRHPYG SRPATATSER VDSWRSSSST TTAAFDEQRS 360
  361 GAAGGAGAAG TGVGSATRGP RRYRTPYRGG RQGRGGFSRQ GPGRPTYRIP RHLLASGEYA 420
  421 NYLPADAAGA DSQSSYVLMG THYFGNVPAA YIELDANSIK EAIKKQVEYY FSVDNLTGDF 480
  481 FLRRKMDPEG YIPVTLIASF HRVLALTTDV AVIVNAIKES DKLELFEGYK VRTKTTPTTW 540
  541 PITEVPEVNE GEPKAIGTLE QEQLEQNDGQ EKLEEQTEAD SPPPILTSAM ATKPLNSIPP 600
  601 PPMPRNPQNL VPKMLQDKQQ SRSSTIAALN SVNAISALTQ QVEGGAAELA GHLSGLAESV 660
  661 KPKSTSTPDK RNAASAGNGA GSAAALVAEP EGIWKEVKRR SKTNAIKENA TTPPQQQQPP 720
  721 LSQTLNNNND NVKTNNTSSK SKSSSNNAPS NASSSATVCV TTNNASSATK ATTKTTTTST 780
  781 ATTTTNNNIK SGNAAYSKTH SKSSSKTAAP PSAQCHAEKE ELDFQFDEEL MDPLPPGTGR 840
  841 INNFTENFSD DDESDYEFAD RDINKLLIVA QVGRAPKHEG YDRTADFTSR TKITQDLENI 900
  901 INDGLVNYEE DLWTTTNVVA DYKTVNVISQ ADFEKLAGGR NKSVLPPQVV PPPPPFEEDL 960
  961 DETLVGDTTL NSTLNNTLKS RRARFYAAPN SHSIDPRTPR KRKLRHTANP PVEAHVGWLL1020
 1021 DTVEHRPRTT SMGSSAGTSP TASSYGSFGS SVPQSLPVFQ HPSHALLKEN NFTQQAYHKY1080
 1081 HSRCLKERRR LGYGQSQEMN TLYRFWSFFL RENFNKSMYN EFRSLALEDA GNGFRYGLEC1140
 1141 LFRFFSYGLE KKFRPNIYQD FQDETIADYE TGQLYGLEKF WAFLKYYKNG EKLEVQPKLA1200
 1201 EYLKSFKNIE DFRVVEPEIN EMLQGVGSLN PGRQLNRHRS VSESDGTAVI AAGGRRLNTT1260
 1261 ITNRSDYVGR LLQQQHQQQQ QQQHHQYQQG YGGYNQQQNR RRTGSFGSTT VRIRSGSLGN1320
 1321 KPQVANRNQG SQHELRRGGS NSGLAPHKRQ QQQKPKPGAG SQTGSTRATT SAAATATTAA1380
 1381 SAATSTAATP AVTVSSGSSS SKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..122] deduced N/A No confident structure predictions are available.
    2 View Details [123..295] MSA 2.194995 View MSA. No confident structure predictions are available.
    3 View Details [296..452] deduced N/A No confident structure predictions are available.
    4 View Details [453..584] FFAS03 2.17 Solution structure of the La domain of c-Mpl binding protein
    5 View Details [585..693] deduced N/A No confident structure predictions are available.
    6 View Details [694..830] MSA 2.191984 View MSA. No confident structure predictions are available.
    7 View Details [831..1061] deduced N/A No confident structure predictions are available.
    8 View Details [1062..1223] deduced N/A No confident structure predictions are available.
    9 View Details [1224..1403] MSA 1.027967 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.683379929086364 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.16959343932447 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.0949481158963694 bayes_pls_golite062009
  • DNA binding
    		•  0.00746597740509714 bayes_pls_golite062009
    5 No functions predicted.
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle