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Protein Overview: gi|12803159, gi|...

General Information:
Name(s) found: gi|18543329 [NCBI NR]
gi|13278912 [NCBI NR]
gi|13278837 [NCBI NR]
gi|12803159 [NCBI NR]
gi|119618700 [NCBI NR]
Description(s) found:
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  • gi|18543329|ref|NP_002804.2| proteasome 26S non-ATPase subunit 9 [Homo sapiens] [NCBI NR]
  • gi|13278912|gb|AAH04213.1| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Homo sapiens] [NCBI NR]
  • gi|13278837|gb|AAH04184.1| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Homo sapiens] [NCBI NR]
  • gi|12803159|gb|AAH02383.1| Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Homo sapiens] [NCBI NR]
  • gi|119618700|gb|EAW98294.1| proteasome (prosome, macropain) 26S subunit, non-ATPase, 9, isoform CRA_b [Homo sapiens] [NCBI NR]
  • 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 PE=1 SV=3 [Swiss-Prot]
  • proteasome 26S non-ATPase subunit 9; proteasome 26S non-ATPase regulatory subunit 9; homolog of rat Bridge 1; 26S proteasome regulatory subunit p27 [HMR_022704.fasta]
  • proteasome 26S non-ATPase subunit 9 [Homo sapiens]gi|13278912|gb|AAH04213.1| Proteasome 26S non-ATPase subunit 9 [Homo sapiens]gi|12803159|gb|AAH02383.1| Proteasome 26S non-ATPase subunit 9 [Homo sapiens]gi|13278837|gb|AAH04184.1| Proteasome 26S non-AT [nrdb_11152004_Chlamydomonas]
  • (NM_002813) proteasome (prosome, macropain) 26S subunit, non-ATPase, 9; Proteasome 26S subunit, non-ATPase, 9 [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • proteasome 26S non-ATPase subunit 9 [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • proteasome 26S non-ATPase subunit 9; proteasome 26S non-ATPase regulatory subunit 9; homolog of rat Bridge 1; 26S proteasome regulatory subunit p27 [Homo sapiens] [HumanGallus06162005.fasta]
  • proteasome (prosome, macropain) 26S subunit, non-ATPase, 9, isoform CRA_b [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • unnamed protein product [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • [human_BMb_040710_contam.fasta]
  • 26S proteasome non-ATPase regulatory subunit 9 [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • GeneSymbol=PSMD9 Synonyms=MGC8644|Rpn4|p27 26S proteasome non-ATPase regulatory subunit 9 [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • Isoform p27-L of 26S proteasome non-ATPase regulatory subunit 9 OS=Homo sapiens GN=PSMD9 [122011_hum.fasta]
  • IPI:IPI00010860.2|SWISS-PROT:O00233-1|ENSEMBL:ENSP00000440485|REFSEQ:NP_002804|H-INV:HIT000030848|VEGA:OTTHUMP00000239793 Tax_Id=9606 Gene_Symbol=PSMD9 Isoform p27-L of 26S proteasome non-ATPase regulatory subunit 9 [ipi.HUMAN.20110912.fasta]
  • 26S proteasome non-ATPase regulatory subunit 9 GN=PSMD9 [Doctor+uniprot-HUMAN-120911.fasta]
  • Tax_Id=9606 Gene_Symbol=PSMD9 Isoform p27-L of 26S proteasome non-ATPase regulatory subunit 9 [human-ipi-270911-contam-BSA.fasta]
    • Organism: Homo sapiens
    Length: 223 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDEEARQSG GSSQAGVVTV SDVQELMRRK EEIEAQIKAN YDVLESQKGI GMNEPLVDCE  60
   61 GYPRSDVDLY QVRTARHNII CLQNDHKAVM KQVEEALHQL HARDKEKQAR DMAEAHKEAM 120
  121 SRKLGQSESQ GPPRAFAKVN SISPGSPASI AGLQVDDEIV EFGSVNTQNF QSLHNIGSVV 180
  181 QHSEGKPLNV TVIRRGEKHQ LRLVPTRWAG KGLLGCNIIP LQR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] PSI-BLAST 29.522879 Protease Do (DegP, HtrA), C-terminal domains; Protease Do (DegP, HtrA), catalytic domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • peptidase activity
    		•  4.00482245922158 bayes_pls_golite062009
  • peptidase activity, acting on L-amino acid peptides
    		•  3.80641317919152 bayes_pls_golite062009
  • endopeptidase activity
    		•  3.69721977392816 bayes_pls_golite062009
  • protein binding
    		•  3.40921081688513 bayes_pls_golite062009
  • binding
    		•  3.2595117613307 bayes_pls_golite062009
  • hydrolase activity
    		•  2.69939003844937 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.16834620509051 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.1333716364785 bayes_pls_golite062009
  • DNA binding
    		•  1.94746941980264 bayes_pls_golite062009
  • transcription activator activity
    		•  1.37255187012662 bayes_pls_golite062009
  • transporter activity
    		•  0.666562078558936 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.510205657363692 bayes_pls_golite062009
  • enzyme binding
    		•  0.46071739042312 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.342817187733892 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.299572882681276 bayes_pls_golite062009
  • structural molecule activity
    		•  0.153277808949873 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.141613198202921 bayes_pls_golite062009
  • PDZ domain binding
    		•  0.0604467745298803 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0283953080227368 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.0187659836234897 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle