Protein Overview: RADC_PHOPR, Y202...

General Information:
Name(s) found:	Y202_PHOPR [Swiss-Prot] RADC_PHOPR [Swiss-Prot]
Description(s) found: Found 5 descriptions. SHOW ALL	UPF0758 protein PBPRA0202 OS=Photobacterium profundum GN=PBPRA0202 PE=3 SV=1 [Swiss-Prot] DNA repair protein radC homolog OS=Photobacterium profundum GN=radC PE=3 SV=1 [Swiss-Prot]
Organism:	Photobacterium profundum
Length:	224 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKLLPEES RPREKLLTRG AKALSDAELL AIFLRTGIKG MNAVELATHL LAEFGSLRAL  60
   61 FAADQTLFCL HKGLGPAKYA QLQAIIEMSQ RHLEETLKEG DVLTSPQHTR HYLSQLLRDR 120
  121 QREVFYVLFL DNQHRVIAGE VLFEGTINSA AVYPREIVKR SLEFNAVALI LAHNHPSGVA 180
  181 EPSQSDLRIT RTISDALALV DIRVLDHFIV GDGEIVSFSE QGWL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

New Feature: Upload Your Own Microscopy Data

No microscopy data found in the PDR for this protein.

Protein Structure Data

[What does the above image mean?]
[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..96]	PSI-BLAST	8.69897	Crystal Structure Of Archaeal Xpf/Mus81 Homolog, Hef From Pyrococcus Furiosus, Helix-hairpin-helix Domain
2	View Details	[97..224]	PSI-BLAST	40.30103	No description for 2qlcA was found.

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
deoxyribonuclease activity	1.94644856236502	bayes_pls_golite062009
catalytic activity	1.9303555688427	bayes_pls_golite062009
endodeoxyribonuclease activity	1.88989456615424	bayes_pls_golite062009
DNA helicase activity	1.83146987493465	bayes_pls_golite062009
four-way junction helicase activity	1.7774844748266	bayes_pls_golite062009
hydrolase activity	1.66546843102205	bayes_pls_golite062009
excinuclease ABC activity	1.39254708050007	bayes_pls_golite062009
helicase activity	1.14079869095094	bayes_pls_golite062009
damaged DNA binding	0.72918713704553	bayes_pls_golite062009
single-stranded DNA binding	0.44369712964701	bayes_pls_golite062009
structure-specific DNA binding	0.36890004800241	bayes_pls_golite062009
nuclease activity	0.32594639151447	bayes_pls_golite062009
endonuclease activity	0.287519901768059	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.15944437485539	bayes_pls_golite062009
pyrophosphatase activity	0.0669727336969201	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.05756449780621	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0572628370858399	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0554315973046002	bayes_pls_golite062009

2

No functions predicted.

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.96

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle