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Protein Overview: FOCA_ECOLI

General Information:
Name(s) found: FOCA_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|81175297|sp|P0AC23.1|FOCA_ECOLI RecName: Full=Probable formate transporter 1; AltName: Full=Formate channel 1 [NCBI NR]
  • pir||A32305 probable formate transport protein - Escherichia coli (strain K-12) [NCBI NR]
  • pir||A85616 probable formate transport protein - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • pir||C90752 probable formate transporter FocA ECs0987 [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • gi|209774946|gb|ACI85785.1| putative formate transporter FocA [Escherichia coli] [NCBI NR]
  • gi|209774944|gb|ACI85784.1| putative formate transporter FocA [Escherichia coli] [NCBI NR]
  • gi|209774942|gb|ACI85783.1| putative formate transporter FocA [Escherichia coli] [NCBI NR]
  • gi|209774940|gb|ACI85782.1| putative formate transporter FocA [Escherichia coli] [NCBI NR]
  • gi|209774938|gb|ACI85781.1| putative formate transporter FocA [Escherichia coli] [NCBI NR]
  • Probable formate transporter 1 (Formate channel 1) - Escherichia coli [Swiss-Prot]
  • formate transport protein (formate channel 1) (FNT family); probable formate transporter (formate channel 1) [Escherichia coli K12]gi|15830241|ref|NP_309014.1| FocA; putative formate transporter [Escherichia coli O157:H7]gi|15800765|ref|NP_286779.1| pro [nrdb_11152004_Chlamydomonas]
  • Probable formate transporter 1 (Formate channel 1) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Probable formate transporter 1 OS=Escherichia coli (strain K12) GN=focA PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 285 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKADNPFDLL LPAAMAKVAE EAGVYKATKH PLKTFYLAIT AGVFISIAFV FYITATTGTG  60
   61 TMPFGMAKLV GGICFSLGLI LCVVCGADLF TSTVLIVVAK ASGRITWGQL AKNWLNVYFG 120
  121 NLVGALLFVL LMWLSGEYMT ANGQWGLNVL QTADHKVHHT FIEAVCLGIL ANLMVCLAVW 180
  181 MSYSGRSLMD KAFIMVLPVA MFVASGFEHS IANMFMIPMG IVIRDFASPE FWTAVGSAPE 240
  241 NFSHLTVMNF ITDNLIPVTI GNIIGGGLLV GLTYWVIYLR ENDHH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..285] FFAS03 1.49 Glycerol uptake facilitator protein GlpF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  3.29716739878922 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  2.94662039655367 bayes_pls_golite062009
  • channel activity
    		•  2.9414344431192 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  2.9414344431192 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  2.89191055188639 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  2.82037090563528 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  2.65037422078415 bayes_pls_golite062009
  • nitrate transmembrane transporter activity
    		•  1.47913191081789 bayes_pls_golite062009
  • water transmembrane transporter activity
    		•  1.45822447350992 bayes_pls_golite062009
  • water channel activity
    		•  1.30496704143853 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  0.909897861102259 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.843641784538908 bayes_pls_golite062009
  • carboxylic acid transmembrane transporter activity
    		•  0.665829718813242 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  0.641796590324282 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  0.619845435332912 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  0.232492592199022 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.156116095173723 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle