YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FOCA_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKADNPFDLL LPAAMAKVAE EAGVYKATKH PLKTFYLAIT AGVFISIAFV FYITATTGTG  60
   61 TMPFGMAKLV GGICFSLGLI LCVVCGADLF TSTVLIVVAK ASGRITWGQL AKNWLNVYFG 120
  121 NLVGALLFVL LMWLSGEYMT ANGQWGLNVL QTADHKVHHT FIEAVCLGIL ANLMVCLAVW 180
  181 MSYSGRSLMD KAFIMVLPVA MFVASGFEHS IANMFMIPMG IVIRDFASPE FWTAVGSAPE 240
  241 NFSHLTVMNF ITDNLIPVTI GNIIGGGLLV GLTYWVIYLR ENDHH

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	55	0.96
Non-Cytoplasmic	56	72	0.79
Transmembrane Helix	73	98	0.89
Cytoplasmic	99	113	0.94
Transmembrane Helix	114	136	0.91
Non-Cytoplasmic	137	159	0.92
Transmembrane Helix	160	181	0.94
Cytoplasmic	182	191	0.83
Transmembrane Helix	192	212	0.91
Non-Cytoplasmic	213	254	0.93
Transmembrane Helix	255	278	0.91
Cytoplasmic	279	285	0.93