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Protein Overview: gi|7523664, gi|2...

General Information:
Name(s) found: gi|7523664 [NCBI NR]
gi|30725592 [NCBI NR]
gi|25405150 [NCBI NR]
gi|18401084 [NCBI NR]
gi|15450898 [NCBI NR]
Description(s) found:
Found 14 descriptions.
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  • gi|7523664|gb|AAF63104.1|AC006423_5 Unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|30725592|gb|AAP37818.1| At1g43860 [Arabidopsis thaliana] [NCBI NR]
  • pir||E96502 hypothetical protein F28H19.11 [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|18401084|ref|NP_564488.1| transcription factor [Arabidopsis thaliana] [NCBI NR]
  • gi|15450898|gb|AAK96720.1| Unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of transcription [TAS]
    Molecular Function: transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKTLVQPVG QKRLTNVAVV RLKKQGNRFE IACYKNKVLS WRSGVEKDID EVLQSHTVYS  60
   61 NVSKGVLAKS KDLMKSFGSD DHTKICIDIL EKGELQVAGK ERESQFSSQF RDIATIVMQK 120
  121 TINPETQRPY TISMVERLMH EIHFAVDPHS NSKKQALDVI RELQKHFPIK RSPMRLRLTV 180
  181 PVQNFPSLLE KLKEWDGSVV SKDESGTQMS TVCEMEPGLF RECDSHVRSI QGRLEILAVS 240
  241 VHAEGDTSMD HYDEHDDMAL QTHKPLLPAE TETKDLTDPV VELSKKLQKQ EISTTDNIKQ 300
  301 EGGEEKKGTK CSTCNTFVGE AKQYREHCKS DWHKHNLKRK TRKLPPISAD ECMSEIDMDD 360
  361 SRADLKDYSF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..252] PSI-BLAST 75.69897 Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
    2 View Details [253..370] FFAS03 2.0 Solution Structure of the N-terminal Zinc Fingers of the Xenopus laevis double stranded RNA binding protein ZFa

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.68743405828801 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68045904515072 bayes_pls_golite062009
  • DNA binding
    		•  3.67134559212672 bayes_pls_golite062009
  • binding
    		•  2.99742524370422 bayes_pls_golite062009
  • transcription factor activity
    		•  2.74156749164617 bayes_pls_golite062009
  • tubulin binding
    		•  2.50315041918055 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.50293208976182 bayes_pls_golite062009
  • RNA binding
    		•  2.42316104797971 bayes_pls_golite062009
  • microtubule binding
    		•  2.41705231602642 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.22192907025847 bayes_pls_golite062009
  • transcription activator activity
    		•  1.65132234119107 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.57041104288348 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.16875264917476 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.02112591326973 bayes_pls_golite062009
  • transcription factor binding
    		•  0.992551517825148 bayes_pls_golite062009
  • protein binding
    		•  0.952480850696098 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.885270755906501 bayes_pls_golite062009
  • chromatin binding
    		•  0.882614685845383 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.757882685828839 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.429714523640337 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.336256827445227 bayes_pls_golite062009
  • mRNA binding
    		•  0.286696927901849 bayes_pls_golite062009
  • catalytic activity
    		•  0.263007611601737 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle