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Protein Overview: CP19D_ARATH

General Information:
Name(s) found: CP19D_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|84028862|sp|Q8LDP4.2|CP19D_ARATH RecName: Full=Peptidyl-prolyl cis-trans isomerase CYP19-4; Short=PPIase CYP19-4; Short=Rotamase CYP19-4; AltName: Full=Cyclophilin of 19 kDa 4; AltName: Full=Cyclophilin-5; Flags: Precursor [NCBI NR]
  • pir||T02489 peptidylprolyl isomerase (EC 5.2.1.8) F23F1.12 - Arabidopsis thaliana [NCBI NR]
  • gi|3420055|gb|AAC31856.1| cyclophilin [Arabidopsis thaliana] [NCBI NR]
  • gi|23197720|gb|AAN15387.1| cyclophilin [Arabidopsis thaliana] [NCBI NR]
  • gi|15451026|gb|AAK96784.1| cyclophilin [Arabidopsis thaliana] [NCBI NR]
  • gi|15227674|ref|NP_180557.1| CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [NCBI NR]
  • Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2 [Swiss-Prot]
  • (O80876) Cyclophilin (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) [athaliana3702.FASTAC.txt]
  • cyclophilin [Arabidopsis thaliana]gi|3420055|gb|AAC31856.1| cyclophilin [Arabidopsis thaliana]gi|15451026|gb|AAK96784.1| cyclophilin [Arabidopsis thaliana]gi|15227674|ref|NP_180557.1| peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP5) / rotamase [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Peptidyl-prolyl cis-trans isomerase [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ATCYP5, CYP19-4, CYP5 | CYP5 (cyclophilin 5); peptidyl-prolyl cis-trans isomerase | chr2:12776260-12777605 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • cyclophilin [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Peptidyl-prolyl cis-trans isomerase CYP19-4 precursor (PPIase CYP19-4) (Rotamase CYP19-4) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) [nr-271106-contam.fasta]
  • CYP5; peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • CYP5 (CYCLOPHILIN 5); peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • | Symbols: CYP5, ATCYP5, CYP19-4 | cyclophilin 5 | chr2:12769183-12770528 REVERSE LENGTH=201 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 201 amino acids

    Gene Ontology:
    Cellular Component: membrane fraction [IDA]
    cytosol [IDA]
    endoplasmic reticulum [IDA]
    multivesicular body [IDA]
    Golgi stack [IDA]
    Biological Process: protein folding [ISS]
    Molecular Function: peptidyl-prolyl cis-trans isomerase activity [IDA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKASFILLG TLFLFGAIAS IQAKEDLKEV THKVYFDVEI DGKSAGRVVI GLFGKAVPKT  60
   61 AENFRALCTG EKGVGKSGKP LHYKGSKFHR IIPSFMIQGG DFTHGNGMGG ESIYGQKFAD 120
  121 ENFKLKHTGP GVLSMANSGE DTNGSQFFIT TVTTSWLDGR HVVFGKVVQG MDVVYKIEAE 180
  181 GKQSGTPKSK VVIADSGELP L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..201] PSI-BLAST 67.39794 Cyclophilin (eukaryotic)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • protein deacetylase activity
    		•  4.3775483906311 bayes_pls_golite062009
  • histone deacetylase activity
    		•  4.29026678196473 bayes_pls_golite062009
  • peptidyl-prolyl cis-trans isomerase activity
    		•  3.73853378771688 bayes_pls_golite062009
  • cis-trans isomerase activity
    		•  3.66963215732405 bayes_pls_golite062009
  • deacetylase activity
    		•  3.49940864924766 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
    		•  3.01511519120932 bayes_pls_golite062009
  • RNA binding
    		•  2.94609837984526 bayes_pls_golite062009
  • isomerase activity
    		•  1.96529188741504 bayes_pls_golite062009
  • binding
    		•  1.46018233647024 bayes_pls_golite062009
  • mRNA binding
    		•  1.45537055700871 bayes_pls_golite062009
  • unfolded protein binding
    		•  1.38124355054041 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.939772862764466 bayes_pls_golite062009
  • catalytic activity
    		•  0.748655649755714 bayes_pls_golite062009
  • hydrolase activity
    		•  0.493806105600863 bayes_pls_golite062009
  • hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
    		•  0.408539130322443 bayes_pls_golite062009
  • drug binding
    		•  0.36339132904137 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  0.322244688184474 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  0.286133802341887 bayes_pls_golite062009
  • histone binding
    		•  0.268719695649015 bayes_pls_golite062009
  • protein binding
    		•  0.130251391659493 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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