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Protein Overview: gi|94442509, gi|...

General Information:
Name(s) found: gi|94442509 [NCBI NR]
gi|3157927 [NCBI NR]
gi|25345328 [NCBI NR]
gi|24430116 [NCBI NR]
gi|15221184 [NCBI NR]
Description(s) found:
Found 15 descriptions.
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  • gi|94442509|gb|ABF19042.1| At1g12070 [Arabidopsis thaliana] [NCBI NR]
  • gi|3157927|gb|AAC17610.1| Contains similarity to GDP-dissociation inhibitor gb|L07918 from Mus musculus. [Arabidopsis thaliana] [NCBI NR]
  • pir||A86256 hypothetical protein [imported] - Arabidopsis thaliana [NCBI NR]
  • gi|24430116|gb|AAM97312.1| Rho GDP-dissociation inhibitor 2b [Arabidopsis thaliana] [NCBI NR]
  • gi|15221184|ref|NP_172671.1| Rho GDP-dissociation inhibitor family protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 223 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEA][ISS]
    Biological Process: biological_process [ND]
    Molecular Function: Rho GDP-dissociation inhibitor activity [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNDEEMKA GESSEEPKGQ GLSRKNSHSS MCPTDDDEEE EDKKLELGPM IALKEQLEKD  60
   61 KDDESLRRWK EQLLGSVDLE EVGETPDPLV KILTLTIRSP DREDMVLTIP ENGKPASKGP 120
  121 WFTLKEGSKY TLIFTFRVTN NIVSGLQYSN TVWKTGIKVY SRKEMLGTFS PQAEPYTHVM 180
  181 FEETAPSGLL VRGSYSVKSK FVDDDNQCYL ENNYTFDIRK NWL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..223] PSI-BLAST 79.221849 Rho GDP-dissociation inhibitor 1, RhoGDI

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  4.21900602727099 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.82728537491772 bayes_pls_golite062009
  • binding
    		•  2.65544526722793 bayes_pls_golite062009
  • Rho GDP-dissociation inhibitor activity
    		•  1.67374100547551 bayes_pls_golite062009
  • actin filament binding
    		•  1.67203076960313 bayes_pls_golite062009
  • small GTPase regulator activity
    		•  1.55727555528218 bayes_pls_golite062009
  • protein binding
    		•  1.50286160643298 bayes_pls_golite062009
  • GTPase regulator activity
    		•  1.44225801859996 bayes_pls_golite062009
  • nucleoside-triphosphatase regulator activity
    		•  1.42486878565247 bayes_pls_golite062009
  • clathrin binding
    		•  1.23902179002817 bayes_pls_golite062009
  • enzyme regulator activity
    		•  1.05880190577068 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.929966017205863 bayes_pls_golite062009
  • potassium channel activity
    		•  0.871728492941793 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  0.848303301157398 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  0.829939555243379 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.829140804686535 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  0.820413268771765 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.796075411518814 bayes_pls_golite062009
  • channel activity
    		•  0.796075411518814 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.790863065462458 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  0.787347074261486 bayes_pls_golite062009
  • cation channel activity
    		•  0.770955130885998 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.760234877475175 bayes_pls_golite062009
  • ion channel activity
    		•  0.743051345681968 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.735623329949285 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.698762820554681 bayes_pls_golite062009
  • gated channel activity
    		•  0.62499749903999 bayes_pls_golite062009
  • GDP-dissociation inhibitor activity
    		•  0.580608094701522 bayes_pls_golite062009
  • inward rectifier potassium channel activity
    		•  0.43450134854604 bayes_pls_golite062009
  • ligand-gated channel activity
    		•  0.302082279531376 bayes_pls_golite062009
  • ligand-gated ion channel activity
    		•  0.302082279531376 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle