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Protein Overview: H3L5_ARATH

General Information:
Name(s) found: H3L5_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759615|dbj|BAB11557.1| histone H3 [Arabidopsis thaliana] [NCBI NR]
  • gi|75333996|sp|Q9FKQ3.3|H3L5_ARATH RecName: Full=Putative histone H3-like 5 [NCBI NR]
  • gi|15238430|ref|NP_201338.1| histone H3 [Arabidopsis thaliana] [NCBI NR]
  • gi|117168143|gb|ABK32154.1| At5g65350 [Arabidopsis thaliana] [NCBI NR]
  • Histone H3-like 5 OS=Arabidopsis thaliana GN=At5g65350 PE=2 SV=3 [Swiss-Prot]
  • (Q9FKQ3) Histone H3 [athaliana3702.FASTAC.txt]
  • histone H3 [Arabidopsis thaliana]gi|15238430|ref|NP_201338.1| histone H3 [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Histone H3 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | histone H3 | chr5:26136632-26137051 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • histone H3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • DNA binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At5g65350 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HTR11 | histone 3 11 | chr5:26119406-26119825 REVERSE LENGTH=139 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 139 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    nucleosome [IEA]
    Biological Process: nucleosome assembly [IEA]
    Molecular Function: DNA binding [IEA][ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTKQTARI STGGKAPRKQ LAPKAARQSA PATGGVKKPH RFRPGTVALR DIRKYQKSTE  60
   61 ILIRKLPFQR LVREIAQDFK TDLRFQSSAV AALQEAAEAY LVGLFEDTNL CAIHAKRVTI 120
  121 MPKEIQLARR IRGERARGE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..139] PSI-BLAST 54.39794 Histone H3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  6.43582244485566 bayes_pls_golite062009
  • DNA binding
    		•  4.49118409263799 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.35201412176948 bayes_pls_golite062009
  • transcription regulator activity
    		•  4.08606081850613 bayes_pls_golite062009
  • binding
    		•  3.27510691458843 bayes_pls_golite062009
  • transcription factor activity
    		•  2.51581622888695 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  2.38228606466152 bayes_pls_golite062009
  • transcription repressor activity
    		•  2.3574713307436 bayes_pls_golite062009
  • transcription initiation factor activity
    		•  1.57176056919918 bayes_pls_golite062009
  • transcription corepressor activity
    		•  1.30859203490073 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  1.30425023787663 bayes_pls_golite062009
  • lysine N-acetyltransferase activity
    		•  1.30425023787663 bayes_pls_golite062009
  • transcription activator activity
    		•  1.25487495162413 bayes_pls_golite062009
  • transcription factor binding
    		•  1.15204005455906 bayes_pls_golite062009
  • transcription coactivator activity
    		•  1.1297723528047 bayes_pls_golite062009
  • protein binding
    		•  1.07873333188144 bayes_pls_golite062009
  • centromeric DNA binding
    		•  1.03586371237592 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.01502031330902 bayes_pls_golite062009
  • histone binding
    		•  0.218942897869955 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.0852726470007639 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle