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Protein Overview: CH60C_ARATH

General Information:
Name(s) found: CH60C_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9294610|dbj|BAB02911.1| chaperonin; similar to GroEL protein [Arabidopsis thaliana] [NCBI NR]
  • gi|85718628|sp|Q93ZM7.2|CH60C_ARATH RecName: Full=Chaperonin CPN60-like 2, mitochondrial; AltName: Full=HSP60-like 2; Flags: Precursor [NCBI NR]
  • gi|53850565|gb|AAU95459.1| At3g13860 [Arabidopsis thaliana] [NCBI NR]
  • gi|20453166|gb|AAM19824.1| AT3g13860/MCP4_7 [Arabidopsis thaliana] [NCBI NR]
  • gi|18400195|ref|NP_566466.1| HSP60-3A (HEAT SHOCK PROTEIN 60-3A); ATP binding / protein binding [Arabidopsis thaliana] [NCBI NR]
  • Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=2 SV=2 [Swiss-Prot]
  • (Q9LRW0) Chaperonin, similar to groEL protein (AT3g13860/MCP4_7) [athaliana3702.FASTAC.txt]
  • At3g13860 [Arabidopsis thaliana]gi|9294610|dbj|BAB02911.1| chaperonin; similar to GroEL protein [Arabidopsis thaliana]gi|20453166|gb|AAM19824.1| AT3g13860/MCP4_7 [Arabidopsis thaliana]gi|18400195|ref|NP_566466.1| chaperonin, putative [Arabidopsis thali [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Chaperonin [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | chaperonin, putative | chr3:4561711-4565140 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • chaperonin; similar to GroEL protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Chaperonin CPN60-like 2, mitochondrial precursor (HSP60-like 2) [nr-271106-contam.fasta]
  • ATP binding / protein binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • At3g13860 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • AT3g13860/MCP4_7 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: HSP60-3A | heat shock protein 60-3A | chr3:4561704-4565133 REVERSE LENGTH=572 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Chaperonin CPN60-like 2, mitochondrial OS=Arabidopsis thaliana GN=At3g13860 PE=1 SV=2 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 572 amino acids

    Gene Ontology:
    Cellular Component: mitochondrion [IDA]
    plasma membrane [IDA]
    Biological Process: response to cadmium ion [IEP]
    Molecular Function: ATP binding [IEA]
    protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYRVLSKLSS SIGSSTSRKL VSGRIISSRN YAAKDISFGI GARAAMLQGV SEVAEAVKVT  60
   61 MGPKGRNVII ESSYGGPKIT KDGVTVAKSI SFQAKAKNIG AELVKQVASA TNKVAGDGTT 120
  121 CATVLTQAIL IEGCKSVAAG VNVMDLRVGI NMAIAAVVSD LKSRAVMIST PEEITQVATI 180
  181 SANGEREIGE LIARAMEKVG KEGVITVADG NTLDNELEVV EGMKLARGYI SPYFITDEKT 240
  241 QKCELENPII LIHEKKISDI NSLLKVLEAA VKSSRPLLIV AEDVESDALA MLILNKHHGG 300
  301 LKVCAIKAPG FGDNRKASLD DLAVLTGAEV ISEERGLSLE KIRPELLGTA KKVTVTRDDT 360
  361 IILHGGGDKK LIEERCEELR SANEKSTSTF DQEKTQERLS KLSGGVAVFK VGGASESEVG 420
  421 ERKDRVTDAL NATRAAVEEG IIPGGGVALL YATKALDNLQ TENEDQRRGV QIVQNALKAP 480
  481 AFTIAANAGY DGSLVVGKLL EQDDCNFGFD AAKGKYVDMV KAGIIDPVKV IRTALTDAAS 540
  541 VSLLLTTTEA SVLVKADENT PNHVPDMASM GM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..572] PSI-BLAST 171.0 GroEL, E domain; GroEL, A domain; GroEL, I domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • misfolded protein binding
    		•  2.60932901317399 bayes_pls_golite062009
  • unfolded protein binding
    		•  2.43437265897634 bayes_pls_golite062009
  • lipopolysaccharide binding
    		•  2.08823822762317 bayes_pls_golite062009
  • binding
    		•  2.07154556649829 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  1.90846357786961 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  1.85422470116133 bayes_pls_golite062009
  • protein binding
    		•  1.68543685258552 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67284737458957 bayes_pls_golite062009
  • DNA binding
    		•  1.53776996197958 bayes_pls_golite062009
  • transporter activity
    		•  1.27879339110564 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.08697283907212 bayes_pls_golite062009
  • chaperone binding
    		•  0.91200031047441 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.828920415160435 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  0.787685249362834 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.75018875403424 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  0.69634667457441 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.682843768728088 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.680378643689288 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.650832159017275 bayes_pls_golite062009
  • ATPase activity
    		•  0.584574936611857 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.573106450426516 bayes_pls_golite062009
  • insulin binding
    		•  0.54263404774246 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.44104272460881 bayes_pls_golite062009
  • catalytic activity
    		•  0.424959044318554 bayes_pls_golite062009
  • cell surface binding
    		•  0.326492680678891 bayes_pls_golite062009
  • peptide hormone binding
    		•  0.280457039468896 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.280310103153739 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.275534581026027 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.252704226951294 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.243984617084631 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.205808843369749 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.202279803135899 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.20198255686005 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0778814959589007 bayes_pls_golite062009
  • hydrolase activity
    		•  0.0491351110520448 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle