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Protein Overview: NUP88_ARATH

General Information:
Name(s) found: NUP88_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|9759093|dbj|BAB09662.1| unnamed protein product [Arabidopsis thaliana] [NCBI NR]
  • gi|15239202|ref|NP_196187.1| nuclear pore complex protein-related [Arabidopsis thaliana] [NCBI NR]
  • Nuclear pore complex protein NUP88 OS=Arabidopsis thaliana GN=NUP88 PE=1 SV=1 [Swiss-Prot]
  • (Q9FFK6) Genomic DNA, chromosome 5, P1 clone:MJJ3 [athaliana3702.FASTAC.txt]
  • unnamed protein product [Arabidopsis thaliana]gi|15239202|ref|NP_196187.1| nuclear pore complex protein-related [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Nuclear pore complex protein-related [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | nuclear pore complex protein-related | chr5:1698366-1702476 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • unnamed protein product [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: MOS7 | nuclear pore complex protein-related | chr5:1698365-1702475 FORWARD LENGTH=810 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Nuclear pore complex protein-like protein OS=Arabidopsis thaliana GN=MOS7 PE=4 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 810 amino acids

    Gene Ontology:
    Cellular Component: nuclear envelope [IDA]
    nuclear pore [IDA]
    Biological Process: systemic acquired resistance [IMP]
    innate immune response [IMP]
    protein export from nucleus [IMP]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFNFNETED APDSRRSPTP KEPVRWVPLQ SHPVFASLPS SQDEPAVSQL FPRNFMAWDG  60
   61 DSRVYYWDSR RYLLHRLSLR LGEPEPSSVL AAVPSKVMQP DLQVTFSVSK ISINKSGSAV 120
  121 LLAGSDGICV MYLFGRASVI EDNVICRVVS IGSEIYTSSD SAITLLQASW HPDSDTHLGI 180
  181 LSSDAVFRLF DLSSDTELPE QEYYLQPGEP GRSRTASSIY PADFSFGGDH LWDRFTVFIL 240
  241 FTDGSIYILC PVVPFGSVYK WESVMEIYND ANMYGVKSSN SLAVSNSSLA IEWLEATFPD 300
  301 LTEQGTRGEN ILVVKAQPYA LLDASLALQG PLYKASSGDG DEDFAVREAE CKGRAVSLLY 360
  361 NLVSKDSILV TAWSAGQLQV DALVDEIQPV WISGNSSRLR MNSHNKIQGV AMICESNISE 420
  421 LPVATSNLPL DHTVWLGHPP PLLRLAMVDL ALPKMREGGS LVTLFADSLL PERIYSLHDG 480
  481 GIDSTVLHSL PFTSQASGKD EALKTPSVHT VLSTCQEESA VSPLLGFVPL SDSFGYSWIV 540
  541 AVLSSGECIV AEMKTWDLLL PIHVSTDKTV SSSAIEKKEQ ENSCIISKEL LAGPKIRIAP 600
  601 HALPNQRSTP ANSVEGRSIL LDYVKLFHEN YIEYAHKVHF ELQHHAPNLK RIIDDQHQRL 660
  661 AEANEKISKV EKNQSFLEKR IDKAIERHDS LEQCLQRLRS LPGTHKKPLT RAELDFKSEL 720
  721 DQYAGVEVDA LQSSIETLRA RVKKSTQKSH KGTVVAASQK KQYSKKNLIQ DTQMSQLQST 780
  781 LAKLSLMNSD NSKKVKIVES ALKSQESSFM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..321] PSI-BLAST 4.045757 No description for 2pm9A was found.
    2 View Details [322..415] deduced N/A No confident structure predictions are available.
    3 View Details [416..810] PSI-BLAST 15.39794 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle